Hb_004705_020

Information

Type -
Description -
Location Contig4705: 60320-67335
Sequence    

Annotation

kegg
ID pop:POPTR_0003s16280g
description POPTRDRAFT_646986; hypothetical protein
nr
ID XP_012088736.1
description PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3 [Jatropha curcas]
swissprot
ID Q8LL04
description RNA polymerase II C-terminal domain phosphatase-like 3 OS=Arabidopsis thaliana GN=CPL3 PE=1 SV=2
trembl
ID A0A067JH84
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23109 PE=4 SV=1
Gene Ontology
ID GO:0005515
description rna polymerase ii c-terminal domain phosphatase-like 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44225: 60345-60492 , PASA_asmbl_44226: 61479-67261 , PASA_asmbl_44227: 60710-61923
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004705_020 0.0 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3 [Jatropha curcas]
2 Hb_001628_070 0.0540317504 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
3 Hb_006531_020 0.0641116739 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
4 Hb_000017_220 0.0672098272 - - PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]
5 Hb_000024_040 0.0695669796 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]
6 Hb_000025_280 0.0709184147 transcription factor TF Family: C3H hypothetical protein JCGZ_07432 [Jatropha curcas]
7 Hb_005977_070 0.0711506988 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
8 Hb_005186_040 0.074879638 - - PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X2 [Jatropha curcas]
9 Hb_007441_160 0.0748975165 - - RNA binding protein, putative [Ricinus communis]
10 Hb_000599_190 0.0754103979 transcription factor TF Family: SNF2 DNA repair and recombination protein RAD26, putative [Ricinus communis]
11 Hb_001488_180 0.0773053734 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
12 Hb_004204_010 0.0788144225 - - PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]
13 Hb_002007_160 0.0796175958 - - PREDICTED: uncharacterized protein LOC105647522 [Jatropha curcas]
14 Hb_005408_030 0.0806698077 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
15 Hb_001951_170 0.0815032476 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
16 Hb_000009_410 0.0834875203 transcription factor TF Family: SET hypothetical protein POPTR_0007s12130g [Populus trichocarpa]
17 Hb_002780_010 0.0835558081 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
18 Hb_000665_230 0.08386636 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
19 Hb_005656_040 0.0838761142 desease resistance Gene Name: T2SE ATP-dependent RNA helicase, putative [Ricinus communis]
20 Hb_000340_490 0.0851811377 - - PREDICTED: ankyrin-1-like [Jatropha curcas]

Gene co-expression network

sample Hb_004705_020 Hb_004705_020 Hb_001628_070 Hb_001628_070 Hb_004705_020--Hb_001628_070 Hb_006531_020 Hb_006531_020 Hb_004705_020--Hb_006531_020 Hb_000017_220 Hb_000017_220 Hb_004705_020--Hb_000017_220 Hb_000024_040 Hb_000024_040 Hb_004705_020--Hb_000024_040 Hb_000025_280 Hb_000025_280 Hb_004705_020--Hb_000025_280 Hb_005977_070 Hb_005977_070 Hb_004705_020--Hb_005977_070 Hb_001628_070--Hb_006531_020 Hb_004586_290 Hb_004586_290 Hb_001628_070--Hb_004586_290 Hb_000003_100 Hb_000003_100 Hb_001628_070--Hb_000003_100 Hb_001628_070--Hb_000024_040 Hb_000412_010 Hb_000412_010 Hb_001628_070--Hb_000412_010 Hb_001951_170 Hb_001951_170 Hb_006531_020--Hb_001951_170 Hb_000331_580 Hb_000331_580 Hb_006531_020--Hb_000331_580 Hb_000009_410 Hb_000009_410 Hb_006531_020--Hb_000009_410 Hb_123531_010 Hb_123531_010 Hb_006531_020--Hb_123531_010 Hb_000028_130 Hb_000028_130 Hb_000017_220--Hb_000028_130 Hb_001635_120 Hb_001635_120 Hb_000017_220--Hb_001635_120 Hb_000017_220--Hb_000025_280 Hb_001473_110 Hb_001473_110 Hb_000017_220--Hb_001473_110 Hb_001488_180 Hb_001488_180 Hb_000017_220--Hb_001488_180 Hb_000347_390 Hb_000347_390 Hb_000024_040--Hb_000347_390 Hb_000703_200 Hb_000703_200 Hb_000024_040--Hb_000703_200 Hb_000024_040--Hb_004586_290 Hb_000479_070 Hb_000479_070 Hb_000024_040--Hb_000479_070 Hb_004483_040 Hb_004483_040 Hb_000025_280--Hb_004483_040 Hb_000069_470 Hb_000069_470 Hb_000025_280--Hb_000069_470 Hb_000317_370 Hb_000317_370 Hb_000025_280--Hb_000317_370 Hb_000025_280--Hb_004586_290 Hb_031042_050 Hb_031042_050 Hb_000025_280--Hb_031042_050 Hb_004204_010 Hb_004204_010 Hb_005977_070--Hb_004204_010 Hb_023344_160 Hb_023344_160 Hb_005977_070--Hb_023344_160 Hb_009658_030 Hb_009658_030 Hb_005977_070--Hb_009658_030 Hb_066920_030 Hb_066920_030 Hb_005977_070--Hb_066920_030 Hb_005977_070--Hb_000017_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.93293 19.2245 5.23256 9.13074 7.13912 7.93663
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.24937 5.71357 9.89107 13.652 14.1036

CAGE analysis