Hb_023344_160

Information

Type -
Description -
Location Contig23344: 163515-179242
Sequence    

Annotation

kegg
ID rcu:RCOM_0541350
description suppression of tumorigenicity, putative
nr
ID XP_012085208.1
description PREDICTED: uncharacterized protein LOC105644462 [Jatropha curcas]
swissprot
ID P78524
description Suppression of tumorigenicity 5 protein OS=Homo sapiens GN=ST5 PE=1 SV=3
trembl
ID A0A067JR66
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17609 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24539: 169296-169677 , PASA_asmbl_24540: 169944-170609 , PASA_asmbl_24541: 170612-171217 , PASA_asmbl_24542: 174024-178818
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023344_160 0.0 - - PREDICTED: uncharacterized protein LOC105644462 [Jatropha curcas]
2 Hb_005977_070 0.0588526129 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
3 Hb_002631_210 0.0671502026 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]
4 Hb_004204_010 0.0838613732 - - PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]
5 Hb_001723_100 0.0871182361 - - PREDICTED: uncharacterized protein LOC105643601 isoform X1 [Jatropha curcas]
6 Hb_001691_200 0.0874383583 - - DNA-directed RNA polymerase II subunit RPB2 [Auxenochlorella protothecoides]
7 Hb_171554_040 0.0891090882 - - PREDICTED: phytanoyl-CoA dioxygenase [Populus euphratica]
8 Hb_002817_060 0.0897858185 - - PREDICTED: coatomer subunit alpha-1 [Jatropha curcas]
9 Hb_066920_030 0.0904186801 - - PREDICTED: adagio protein 1 [Jatropha curcas]
10 Hb_002686_140 0.0922070284 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
11 Hb_001828_170 0.0927826525 - - PREDICTED: protein TPLATE [Jatropha curcas]
12 Hb_004208_050 0.0935641439 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
13 Hb_000574_530 0.0938898083 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
14 Hb_033799_010 0.0939296456 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
15 Hb_011883_020 0.0948512556 - - PREDICTED: LOW QUALITY PROTEIN: aspartate--tRNA ligase, cytoplasmic-like [Jatropha curcas]
16 Hb_005305_050 0.0948949774 - - PREDICTED: armadillo repeat-containing protein 8 [Jatropha curcas]
17 Hb_001511_180 0.0950548867 - - Clathrin heavy chain 2 -like protein [Gossypium arboreum]
18 Hb_002609_080 0.0956655616 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
19 Hb_006531_020 0.0960276941 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
20 Hb_000484_010 0.0969896745 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 23 [Jatropha curcas]

Gene co-expression network

sample Hb_023344_160 Hb_023344_160 Hb_005977_070 Hb_005977_070 Hb_023344_160--Hb_005977_070 Hb_002631_210 Hb_002631_210 Hb_023344_160--Hb_002631_210 Hb_004204_010 Hb_004204_010 Hb_023344_160--Hb_004204_010 Hb_001723_100 Hb_001723_100 Hb_023344_160--Hb_001723_100 Hb_001691_200 Hb_001691_200 Hb_023344_160--Hb_001691_200 Hb_171554_040 Hb_171554_040 Hb_023344_160--Hb_171554_040 Hb_005977_070--Hb_004204_010 Hb_009658_030 Hb_009658_030 Hb_005977_070--Hb_009658_030 Hb_066920_030 Hb_066920_030 Hb_005977_070--Hb_066920_030 Hb_004705_020 Hb_004705_020 Hb_005977_070--Hb_004705_020 Hb_000017_220 Hb_000017_220 Hb_005977_070--Hb_000017_220 Hb_011883_020 Hb_011883_020 Hb_002631_210--Hb_011883_020 Hb_002686_140 Hb_002686_140 Hb_002631_210--Hb_002686_140 Hb_002631_210--Hb_001691_200 Hb_005074_020 Hb_005074_020 Hb_002631_210--Hb_005074_020 Hb_005408_030 Hb_005408_030 Hb_002631_210--Hb_005408_030 Hb_001488_180 Hb_001488_180 Hb_004204_010--Hb_001488_180 Hb_004204_010--Hb_005408_030 Hb_004204_010--Hb_004705_020 Hb_004204_010--Hb_009658_030 Hb_011021_050 Hb_011021_050 Hb_004204_010--Hb_011021_050 Hb_020178_040 Hb_020178_040 Hb_001723_100--Hb_020178_040 Hb_001723_100--Hb_066920_030 Hb_002272_030 Hb_002272_030 Hb_001723_100--Hb_002272_030 Hb_001404_110 Hb_001404_110 Hb_001723_100--Hb_001404_110 Hb_001723_100--Hb_002631_210 Hb_000347_400 Hb_000347_400 Hb_001723_100--Hb_000347_400 Hb_004208_050 Hb_004208_050 Hb_001691_200--Hb_004208_050 Hb_001691_200--Hb_011883_020 Hb_002609_080 Hb_002609_080 Hb_001691_200--Hb_002609_080 Hb_005181_050 Hb_005181_050 Hb_001691_200--Hb_005181_050 Hb_000270_170 Hb_000270_170 Hb_001691_200--Hb_000270_170 Hb_033799_010 Hb_033799_010 Hb_171554_040--Hb_033799_010 Hb_001124_050 Hb_001124_050 Hb_171554_040--Hb_001124_050 Hb_000574_530 Hb_000574_530 Hb_171554_040--Hb_000574_530 Hb_007012_040 Hb_007012_040 Hb_171554_040--Hb_007012_040 Hb_171554_040--Hb_005408_030 Hb_000170_100 Hb_000170_100 Hb_171554_040--Hb_000170_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.58808 5.82748 2.36874 4.24345 1.80794 2.27564
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.52634 1.6956 4.25473 5.03929 5.16425

CAGE analysis