Hb_007012_040

Information

Type transcription factor
Description TF Family: C3H
Location Contig7012: 28100-36914
Sequence    

Annotation

kegg
ID rcu:RCOM_0172980
description nuclear receptor binding set domain containing protein 1, nsd, putative
nr
ID XP_012065289.1
description PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
swissprot
ID Q9SD34
description Zinc finger CCCH domain-containing protein 44 OS=Arabidopsis thaliana GN=At3g51120 PE=2 SV=3
trembl
ID A0A067LE48
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06480 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger ccch domain-containing protein 44

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54872: 31363-31542 , PASA_asmbl_54873: 33519-33748 , PASA_asmbl_54874: 35482-36529 , PASA_asmbl_54875: 36706-36985
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007012_040 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
2 Hb_003124_270 0.0512690617 transcription factor TF Family: LUG hypothetical protein JCGZ_13223 [Jatropha curcas]
3 Hb_004884_090 0.0700018056 - - importin beta-1, putative [Ricinus communis]
4 Hb_171554_040 0.0778644659 - - PREDICTED: phytanoyl-CoA dioxygenase [Populus euphratica]
5 Hb_000154_130 0.0779352608 - - PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]
6 Hb_004551_020 0.0782262195 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
7 Hb_000445_130 0.0784117241 transcription factor TF Family: C3H hypothetical protein JCGZ_12159 [Jatropha curcas]
8 Hb_000844_050 0.0785200106 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
9 Hb_012490_010 0.0798564344 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
10 Hb_005181_050 0.0831028222 - - PREDICTED: phytochrome B isoform X1 [Jatropha curcas]
11 Hb_000200_110 0.0841722908 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X1 [Jatropha curcas]
12 Hb_011021_050 0.086296563 - - PREDICTED: uncharacterized protein LOC105644387 isoform X1 [Jatropha curcas]
13 Hb_001477_020 0.0876190551 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105646886 isoform X3 [Jatropha curcas]
14 Hb_033799_010 0.0878991667 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
15 Hb_002078_470 0.0882646655 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 4 isoform X1 [Jatropha curcas]
16 Hb_000809_250 0.0889449699 - - PREDICTED: uncharacterized protein LOC105639683 [Jatropha curcas]
17 Hb_000331_100 0.0904476185 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
18 Hb_000170_100 0.0914216877 transcription factor TF Family: C3H hypothetical protein JCGZ_12159 [Jatropha curcas]
19 Hb_003849_280 0.0915548096 - - PREDICTED: uncharacterized protein LOC105644977 [Jatropha curcas]
20 Hb_005408_030 0.0916539085 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]

Gene co-expression network

sample Hb_007012_040 Hb_007012_040 Hb_003124_270 Hb_003124_270 Hb_007012_040--Hb_003124_270 Hb_004884_090 Hb_004884_090 Hb_007012_040--Hb_004884_090 Hb_171554_040 Hb_171554_040 Hb_007012_040--Hb_171554_040 Hb_000154_130 Hb_000154_130 Hb_007012_040--Hb_000154_130 Hb_004551_020 Hb_004551_020 Hb_007012_040--Hb_004551_020 Hb_000445_130 Hb_000445_130 Hb_007012_040--Hb_000445_130 Hb_000844_050 Hb_000844_050 Hb_003124_270--Hb_000844_050 Hb_003124_270--Hb_004884_090 Hb_005181_050 Hb_005181_050 Hb_003124_270--Hb_005181_050 Hb_000809_250 Hb_000809_250 Hb_003124_270--Hb_000809_250 Hb_003680_020 Hb_003680_020 Hb_003124_270--Hb_003680_020 Hb_004884_090--Hb_005181_050 Hb_004884_090--Hb_000809_250 Hb_009476_120 Hb_009476_120 Hb_004884_090--Hb_009476_120 Hb_033799_010 Hb_033799_010 Hb_004884_090--Hb_033799_010 Hb_171554_040--Hb_033799_010 Hb_001124_050 Hb_001124_050 Hb_171554_040--Hb_001124_050 Hb_000574_530 Hb_000574_530 Hb_171554_040--Hb_000574_530 Hb_005408_030 Hb_005408_030 Hb_171554_040--Hb_005408_030 Hb_000170_100 Hb_000170_100 Hb_171554_040--Hb_000170_100 Hb_000154_130--Hb_000445_130 Hb_000367_020 Hb_000367_020 Hb_000154_130--Hb_000367_020 Hb_011021_050 Hb_011021_050 Hb_000154_130--Hb_011021_050 Hb_000154_130--Hb_003124_270 Hb_001951_100 Hb_001951_100 Hb_000154_130--Hb_001951_100 Hb_012490_010 Hb_012490_010 Hb_004551_020--Hb_012490_010 Hb_000428_030 Hb_000428_030 Hb_004551_020--Hb_000428_030 Hb_008686_020 Hb_008686_020 Hb_004551_020--Hb_008686_020 Hb_002078_470 Hb_002078_470 Hb_004551_020--Hb_002078_470 Hb_000035_100 Hb_000035_100 Hb_004551_020--Hb_000035_100 Hb_000445_130--Hb_001951_100 Hb_015183_080 Hb_015183_080 Hb_000445_130--Hb_015183_080 Hb_000445_130--Hb_003124_270 Hb_000445_130--Hb_000367_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.63038 15.3085 5.89282 8.48877 3.34689 3.9956
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.9064 3.95271 4.11021 9.80725 12.7666

CAGE analysis