Hb_015183_080

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig15183: 42308-45841
Sequence    

Annotation

kegg
ID rcu:RCOM_0625620
description leucine-rich repeat containing protein, putative (EC:3.1.3.16)
nr
ID XP_012073224.1
description PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID A0A067LCH4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06618 PE=4 SV=1
Gene Ontology
ID GO:0004721
description disease resistance rpp13-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12918: 41711-41993 , PASA_asmbl_12920: 43621-43742 , PASA_asmbl_12921: 44620-45682
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015183_080 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
2 Hb_002521_020 0.0818469896 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03100, mitochondrial-like isoform X2 [Jatropha curcas]
3 Hb_003014_030 0.0859519974 - - PREDICTED: thyroid adenoma-associated protein homolog [Jatropha curcas]
4 Hb_000445_130 0.0868955415 transcription factor TF Family: C3H hypothetical protein JCGZ_12159 [Jatropha curcas]
5 Hb_001054_120 0.0871647586 - - PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Jatropha curcas]
6 Hb_000367_020 0.0882789328 - - PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]
7 Hb_001124_050 0.0882836698 transcription factor TF Family: SNF2 PREDICTED: chromatin structure-remodeling complex protein SYD-like [Jatropha curcas]
8 Hb_021596_010 0.0912021016 - - PREDICTED: uncharacterized protein LOC105647118 [Jatropha curcas]
9 Hb_003047_020 0.0936662926 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
10 Hb_008686_020 0.0952735177 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
11 Hb_003895_040 0.1005125791 - - hypothetical protein CISIN_1g0006512mg, partial [Citrus sinensis]
12 Hb_014497_020 0.1014547495 - - PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Jatropha curcas]
13 Hb_000003_410 0.1022071067 - - PREDICTED: intron-binding protein aquarius [Jatropha curcas]
14 Hb_000154_130 0.1032293884 - - PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]
15 Hb_010180_060 0.1037220944 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
16 Hb_171554_040 0.1037507407 - - PREDICTED: phytanoyl-CoA dioxygenase [Populus euphratica]
17 Hb_012490_010 0.105652997 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
18 Hb_001951_100 0.1062307706 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
19 Hb_000574_530 0.1069271607 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
20 Hb_003805_040 0.10707228 - - Sacsin [Glycine soja]

Gene co-expression network

sample Hb_015183_080 Hb_015183_080 Hb_002521_020 Hb_002521_020 Hb_015183_080--Hb_002521_020 Hb_003014_030 Hb_003014_030 Hb_015183_080--Hb_003014_030 Hb_000445_130 Hb_000445_130 Hb_015183_080--Hb_000445_130 Hb_001054_120 Hb_001054_120 Hb_015183_080--Hb_001054_120 Hb_000367_020 Hb_000367_020 Hb_015183_080--Hb_000367_020 Hb_001124_050 Hb_001124_050 Hb_015183_080--Hb_001124_050 Hb_010180_060 Hb_010180_060 Hb_002521_020--Hb_010180_060 Hb_005186_040 Hb_005186_040 Hb_002521_020--Hb_005186_040 Hb_001133_030 Hb_001133_030 Hb_002521_020--Hb_001133_030 Hb_002521_020--Hb_001124_050 Hb_009486_170 Hb_009486_170 Hb_002521_020--Hb_009486_170 Hb_001377_100 Hb_001377_100 Hb_002521_020--Hb_001377_100 Hb_029243_020 Hb_029243_020 Hb_003014_030--Hb_029243_020 Hb_004705_020 Hb_004705_020 Hb_003014_030--Hb_004705_020 Hb_009486_090 Hb_009486_090 Hb_003014_030--Hb_009486_090 Hb_003014_030--Hb_001124_050 Hb_000083_270 Hb_000083_270 Hb_003014_030--Hb_000083_270 Hb_000154_130 Hb_000154_130 Hb_000445_130--Hb_000154_130 Hb_007012_040 Hb_007012_040 Hb_000445_130--Hb_007012_040 Hb_001951_100 Hb_001951_100 Hb_000445_130--Hb_001951_100 Hb_003124_270 Hb_003124_270 Hb_000445_130--Hb_003124_270 Hb_000445_130--Hb_000367_020 Hb_001054_120--Hb_000367_020 Hb_000358_220 Hb_000358_220 Hb_001054_120--Hb_000358_220 Hb_003895_040 Hb_003895_040 Hb_001054_120--Hb_003895_040 Hb_000003_410 Hb_000003_410 Hb_001054_120--Hb_000003_410 Hb_009476_120 Hb_009476_120 Hb_001054_120--Hb_009476_120 Hb_021596_010 Hb_021596_010 Hb_000367_020--Hb_021596_010 Hb_000367_020--Hb_001951_100 Hb_008686_020 Hb_008686_020 Hb_000367_020--Hb_008686_020 Hb_005649_080 Hb_005649_080 Hb_000367_020--Hb_005649_080 Hb_000367_020--Hb_000154_130 Hb_001124_050--Hb_009486_170 Hb_001124_050--Hb_009486_090 Hb_006031_010 Hb_006031_010 Hb_001124_050--Hb_006031_010 Hb_001124_050--Hb_001133_030 Hb_001951_170 Hb_001951_170 Hb_001124_050--Hb_001951_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.751332 3.42336 0.965283 1.57531 0.87168 1.5097
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.390194 0.393426 1.26975 1.7644 2.751

CAGE analysis