Hb_000083_270

Information

Type -
Description -
Location Contig83: 309773-318335
Sequence    

Annotation

kegg
ID rcu:RCOM_0883870
description ATP-dependent RNA helicase, putative
nr
ID XP_012069167.1
description PREDICTED: putative uncharacterized protein At4g01020, chloroplastic [Jatropha curcas]
swissprot
ID P0CE10
description Putative uncharacterized protein At4g01020, chloroplastic OS=Arabidopsis thaliana GN=At4g01020 PE=3 SV=1
trembl
ID A0A067KXQ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24931 PE=4 SV=1
Gene Ontology
ID GO:0003676
description atp-dependent rna

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59795: 309876-315611 , PASA_asmbl_59796: 312511-312738 , PASA_asmbl_59797: 316039-318103
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000083_270 0.0 - - PREDICTED: putative uncharacterized protein At4g01020, chloroplastic [Jatropha curcas]
2 Hb_001699_280 0.0760522929 - - PREDICTED: transformation/transcription domain-associated protein [Jatropha curcas]
3 Hb_000631_110 0.0797507599 - - PREDICTED: activating signal cointegrator 1 complex subunit 3 [Jatropha curcas]
4 Hb_000340_490 0.0832133704 - - PREDICTED: ankyrin-1-like [Jatropha curcas]
5 Hb_002005_080 0.087914684 - - PREDICTED: uncharacterized protein LOC105649750 isoform X1 [Jatropha curcas]
6 Hb_004705_020 0.0887663264 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3 [Jatropha curcas]
7 Hb_001628_070 0.0916501364 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
8 Hb_000574_530 0.0943439444 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
9 Hb_000069_410 0.0954248781 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
10 Hb_001662_180 0.0955933457 - - PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5 [Citrus sinensis]
11 Hb_002631_200 0.0957310446 - - PREDICTED: uncharacterized protein LOC105646171 isoform X2 [Jatropha curcas]
12 Hb_005656_040 0.0959737395 desease resistance Gene Name: T2SE ATP-dependent RNA helicase, putative [Ricinus communis]
13 Hb_000261_150 0.0961891385 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006531_020 0.0963320042 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
15 Hb_003014_030 0.0977972232 - - PREDICTED: thyroid adenoma-associated protein homolog [Jatropha curcas]
16 Hb_185830_070 0.0986199166 - - PREDICTED: enhancer of mRNA-decapping protein 4-like isoform X1 [Jatropha curcas]
17 Hb_009486_090 0.0987502434 - - RNA binding protein, putative [Ricinus communis]
18 Hb_007632_010 0.0988795077 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
19 Hb_002639_080 0.1004807059 - - PREDICTED: large proline-rich protein BAG6 isoform X1 [Jatropha curcas]
20 Hb_000206_040 0.101869837 - - PREDICTED: uncharacterized protein LOC105639683 [Jatropha curcas]

Gene co-expression network

sample Hb_000083_270 Hb_000083_270 Hb_001699_280 Hb_001699_280 Hb_000083_270--Hb_001699_280 Hb_000631_110 Hb_000631_110 Hb_000083_270--Hb_000631_110 Hb_000340_490 Hb_000340_490 Hb_000083_270--Hb_000340_490 Hb_002005_080 Hb_002005_080 Hb_000083_270--Hb_002005_080 Hb_004705_020 Hb_004705_020 Hb_000083_270--Hb_004705_020 Hb_001628_070 Hb_001628_070 Hb_000083_270--Hb_001628_070 Hb_000105_040 Hb_000105_040 Hb_001699_280--Hb_000105_040 Hb_188063_010 Hb_188063_010 Hb_001699_280--Hb_188063_010 Hb_003581_170 Hb_003581_170 Hb_001699_280--Hb_003581_170 Hb_000261_150 Hb_000261_150 Hb_001699_280--Hb_000261_150 Hb_001662_180 Hb_001662_180 Hb_001699_280--Hb_001662_180 Hb_001951_170 Hb_001951_170 Hb_001699_280--Hb_001951_170 Hb_000940_150 Hb_000940_150 Hb_000631_110--Hb_000940_150 Hb_000175_120 Hb_000175_120 Hb_000631_110--Hb_000175_120 Hb_000105_030 Hb_000105_030 Hb_000631_110--Hb_000105_030 Hb_000631_110--Hb_002005_080 Hb_185830_070 Hb_185830_070 Hb_000631_110--Hb_185830_070 Hb_002639_080 Hb_002639_080 Hb_000340_490--Hb_002639_080 Hb_071130_010 Hb_071130_010 Hb_000340_490--Hb_071130_010 Hb_004934_050 Hb_004934_050 Hb_000340_490--Hb_004934_050 Hb_000069_120 Hb_000069_120 Hb_000340_490--Hb_000069_120 Hb_000106_120 Hb_000106_120 Hb_000340_490--Hb_000106_120 Hb_000340_490--Hb_001628_070 Hb_000684_290 Hb_000684_290 Hb_002005_080--Hb_000684_290 Hb_001006_340 Hb_001006_340 Hb_002005_080--Hb_001006_340 Hb_041327_010 Hb_041327_010 Hb_002005_080--Hb_041327_010 Hb_002005_080--Hb_002639_080 Hb_003498_130 Hb_003498_130 Hb_002005_080--Hb_003498_130 Hb_004705_020--Hb_001628_070 Hb_006531_020 Hb_006531_020 Hb_004705_020--Hb_006531_020 Hb_000017_220 Hb_000017_220 Hb_004705_020--Hb_000017_220 Hb_000024_040 Hb_000024_040 Hb_004705_020--Hb_000024_040 Hb_000025_280 Hb_000025_280 Hb_004705_020--Hb_000025_280 Hb_005977_070 Hb_005977_070 Hb_004705_020--Hb_005977_070 Hb_001628_070--Hb_006531_020 Hb_004586_290 Hb_004586_290 Hb_001628_070--Hb_004586_290 Hb_000003_100 Hb_000003_100 Hb_001628_070--Hb_000003_100 Hb_001628_070--Hb_000024_040 Hb_000412_010 Hb_000412_010 Hb_001628_070--Hb_000412_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.37746 15.927 3.47885 5.32993 6.27408 7.24016
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.82146 3.68244 6.47043 15.6629 9.61662

CAGE analysis