Hb_001006_340

Information

Type -
Description -
Location Contig1006: 412134-418764
Sequence    

Annotation

kegg
ID mdm:103414364
description sodium/hydrogen exchanger 7-like
nr
ID XP_008350980.1
description PREDICTED: sodium/hydrogen exchanger 7-like [Malus domestica]
swissprot
ID Q93HU4
description Na(+)/H(+) antiporter ApNhaP OS=Aphanothece halophytica GN=apnhaP PE=1 SV=1
trembl
ID V4U5V3
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018329mg PE=4 SV=1
Gene Ontology
ID GO:0016021
description sodium hydrogen exchanger 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00428: 398915-415459 , PASA_asmbl_00429: 416099-416701
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001006_340 0.0 - - PREDICTED: sodium/hydrogen exchanger 7-like [Malus domestica]
2 Hb_002005_080 0.0805008998 - - PREDICTED: uncharacterized protein LOC105649750 isoform X1 [Jatropha curcas]
3 Hb_004411_030 0.0897246472 - - hypothetical protein POPTR_0017s00310g [Populus trichocarpa]
4 Hb_003060_060 0.1068595373 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
5 Hb_001431_120 0.1091257332 - - PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like [Jatropha curcas]
6 Hb_001754_040 0.1093112796 transcription factor TF Family: TRAF PREDICTED: uncharacterized protein LOC105643434 [Jatropha curcas]
7 Hb_041327_010 0.1094647183 - - PREDICTED: la-related protein 1A isoform X1 [Jatropha curcas]
8 Hb_000395_070 0.1113013518 - - PREDICTED: serine/threonine-protein kinase BLUS1 isoform X2 [Jatropha curcas]
9 Hb_000412_010 0.1173968594 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
10 Hb_000608_230 0.1176154867 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
11 Hb_001963_100 0.1179760746 transcription factor TF Family: bZIP PREDICTED: bZIP transcription factor 17-like [Jatropha curcas]
12 Hb_000037_220 0.1187473083 - - PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]
13 Hb_010021_010 0.1189275387 - - unnamed protein product [Coffea canephora]
14 Hb_003284_030 0.1191815936 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 2 isoform X1 [Jatropha curcas]
15 Hb_000307_210 0.1209306648 - - Transportin 1 isoform 1 [Theobroma cacao]
16 Hb_001001_150 0.1218345167 - - conserved hypothetical protein [Ricinus communis]
17 Hb_178968_050 0.1221201143 - - PREDICTED: probable serine incorporator [Jatropha curcas]
18 Hb_003645_060 0.1224367824 - - PREDICTED: monodehydroascorbate reductase, chloroplastic [Jatropha curcas]
19 Hb_140049_080 0.1236098228 - - PREDICTED: probable RNA helicase SDE3 [Jatropha curcas]
20 Hb_000130_160 0.1238899181 - - PREDICTED: protein DJ-1 homolog B-like [Jatropha curcas]

Gene co-expression network

sample Hb_001006_340 Hb_001006_340 Hb_002005_080 Hb_002005_080 Hb_001006_340--Hb_002005_080 Hb_004411_030 Hb_004411_030 Hb_001006_340--Hb_004411_030 Hb_003060_060 Hb_003060_060 Hb_001006_340--Hb_003060_060 Hb_001431_120 Hb_001431_120 Hb_001006_340--Hb_001431_120 Hb_001754_040 Hb_001754_040 Hb_001006_340--Hb_001754_040 Hb_041327_010 Hb_041327_010 Hb_001006_340--Hb_041327_010 Hb_000684_290 Hb_000684_290 Hb_002005_080--Hb_000684_290 Hb_002005_080--Hb_041327_010 Hb_002639_080 Hb_002639_080 Hb_002005_080--Hb_002639_080 Hb_000083_270 Hb_000083_270 Hb_002005_080--Hb_000083_270 Hb_003498_130 Hb_003498_130 Hb_002005_080--Hb_003498_130 Hb_004411_030--Hb_041327_010 Hb_000037_220 Hb_000037_220 Hb_004411_030--Hb_000037_220 Hb_004411_030--Hb_001754_040 Hb_140049_080 Hb_140049_080 Hb_004411_030--Hb_140049_080 Hb_000003_100 Hb_000003_100 Hb_004411_030--Hb_000003_100 Hb_019840_030 Hb_019840_030 Hb_004411_030--Hb_019840_030 Hb_000412_010 Hb_000412_010 Hb_003060_060--Hb_000412_010 Hb_000395_070 Hb_000395_070 Hb_003060_060--Hb_000395_070 Hb_000230_260 Hb_000230_260 Hb_003060_060--Hb_000230_260 Hb_001529_040 Hb_001529_040 Hb_003060_060--Hb_001529_040 Hb_085781_020 Hb_085781_020 Hb_003060_060--Hb_085781_020 Hb_003060_060--Hb_041327_010 Hb_012146_050 Hb_012146_050 Hb_001431_120--Hb_012146_050 Hb_001341_180 Hb_001341_180 Hb_001431_120--Hb_001341_180 Hb_005402_040 Hb_005402_040 Hb_001431_120--Hb_005402_040 Hb_003645_060 Hb_003645_060 Hb_001431_120--Hb_003645_060 Hb_004064_050 Hb_004064_050 Hb_001431_120--Hb_004064_050 Hb_001381_050 Hb_001381_050 Hb_001431_120--Hb_001381_050 Hb_000579_230 Hb_000579_230 Hb_001754_040--Hb_000579_230 Hb_001754_040--Hb_000395_070 Hb_004676_010 Hb_004676_010 Hb_001754_040--Hb_004676_010 Hb_011618_090 Hb_011618_090 Hb_001754_040--Hb_011618_090 Hb_000789_250 Hb_000789_250 Hb_001754_040--Hb_000789_250 Hb_001754_040--Hb_140049_080 Hb_041327_010--Hb_002639_080 Hb_012286_040 Hb_012286_040 Hb_041327_010--Hb_012286_040 Hb_000261_480 Hb_000261_480 Hb_041327_010--Hb_000261_480 Hb_041327_010--Hb_000230_260 Hb_000069_120 Hb_000069_120 Hb_041327_010--Hb_000069_120 Hb_000537_050 Hb_000537_050 Hb_041327_010--Hb_000537_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.67679 4.27429 2.57486 2.4136 4.76066 3.2533
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.0912 1.00134 3.90492 7.06158 3.31185

CAGE analysis