Hb_001754_040

Information

Type transcription factor
Description TF Family: TRAF
Location Contig1754: 23109-28801
Sequence    

Annotation

kegg
ID rcu:RCOM_0681220
description hypothetical protein
nr
ID XP_012083945.1
description PREDICTED: uncharacterized protein LOC105643434 [Jatropha curcas]
swissprot
ID Q96IK5
description Germ cell-less protein-like 1 OS=Homo sapiens GN=GMCL1 PE=1 SV=1
trembl
ID B9RT57
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0681220 PE=4 SV=1
Gene Ontology
ID GO:0005515
description btb poz domain-containing protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16786: 23115-28507
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001754_040 0.0 transcription factor TF Family: TRAF PREDICTED: uncharacterized protein LOC105643434 [Jatropha curcas]
2 Hb_000579_230 0.0600404225 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
3 Hb_000395_070 0.060309294 - - PREDICTED: serine/threonine-protein kinase BLUS1 isoform X2 [Jatropha curcas]
4 Hb_004676_010 0.0672993269 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Jatropha curcas]
5 Hb_011618_090 0.0682526285 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
6 Hb_000789_250 0.0720071939 - - PREDICTED: uncharacterized protein LOC105637809 [Jatropha curcas]
7 Hb_140049_080 0.0734393184 - - PREDICTED: probable RNA helicase SDE3 [Jatropha curcas]
8 Hb_012395_140 0.0763390947 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
9 Hb_009270_020 0.0763558488 - - PREDICTED: LOW QUALITY PROTEIN: helicase and polymerase-containing protein TEBICHI [Jatropha curcas]
10 Hb_002815_030 0.078482708 - - hypothetical protein CISIN_1g0095162mg, partial [Citrus sinensis]
11 Hb_005357_260 0.0787624189 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
12 Hb_005402_040 0.0793033694 - - PREDICTED: replication factor C subunit 1 [Jatropha curcas]
13 Hb_009615_170 0.0798675254 - - PREDICTED: sphingoid long-chain bases kinase 1 isoform X1 [Jatropha curcas]
14 Hb_000037_220 0.0841663642 - - PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]
15 Hb_003835_070 0.0844269415 - - PREDICTED: uncharacterized protein LOC105641698 isoform X2 [Jatropha curcas]
16 Hb_000537_050 0.0846540893 - - AP-2 complex subunit beta-1, putative [Ricinus communis]
17 Hb_000025_320 0.0849209962 - - PREDICTED: pentatricopeptide repeat-containing protein At4g28010 [Jatropha curcas]
18 Hb_000003_100 0.0851959261 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]
19 Hb_001821_090 0.0857799206 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
20 Hb_002174_030 0.0860887142 - - transcription elongation factor s-II, putative [Ricinus communis]

Gene co-expression network

sample Hb_001754_040 Hb_001754_040 Hb_000579_230 Hb_000579_230 Hb_001754_040--Hb_000579_230 Hb_000395_070 Hb_000395_070 Hb_001754_040--Hb_000395_070 Hb_004676_010 Hb_004676_010 Hb_001754_040--Hb_004676_010 Hb_011618_090 Hb_011618_090 Hb_001754_040--Hb_011618_090 Hb_000789_250 Hb_000789_250 Hb_001754_040--Hb_000789_250 Hb_140049_080 Hb_140049_080 Hb_001754_040--Hb_140049_080 Hb_012395_140 Hb_012395_140 Hb_000579_230--Hb_012395_140 Hb_002815_030 Hb_002815_030 Hb_000579_230--Hb_002815_030 Hb_000579_230--Hb_000395_070 Hb_104061_020 Hb_104061_020 Hb_000579_230--Hb_104061_020 Hb_009270_020 Hb_009270_020 Hb_000579_230--Hb_009270_020 Hb_000579_230--Hb_004676_010 Hb_000395_070--Hb_012395_140 Hb_000740_100 Hb_000740_100 Hb_000395_070--Hb_000740_100 Hb_003060_060 Hb_003060_060 Hb_000395_070--Hb_003060_060 Hb_000412_010 Hb_000412_010 Hb_000395_070--Hb_000412_010 Hb_000395_070--Hb_002815_030 Hb_004676_010--Hb_012395_140 Hb_000703_150 Hb_000703_150 Hb_004676_010--Hb_000703_150 Hb_009615_170 Hb_009615_170 Hb_004676_010--Hb_009615_170 Hb_004676_010--Hb_000395_070 Hb_003835_070 Hb_003835_070 Hb_011618_090--Hb_003835_070 Hb_000317_370 Hb_000317_370 Hb_011618_090--Hb_000317_370 Hb_011618_090--Hb_000579_230 Hb_000922_360 Hb_000922_360 Hb_011618_090--Hb_000922_360 Hb_003544_060 Hb_003544_060 Hb_011618_090--Hb_003544_060 Hb_007083_030 Hb_007083_030 Hb_011618_090--Hb_007083_030 Hb_000313_120 Hb_000313_120 Hb_000789_250--Hb_000313_120 Hb_020378_030 Hb_020378_030 Hb_000789_250--Hb_020378_030 Hb_000789_250--Hb_012395_140 Hb_000537_050 Hb_000537_050 Hb_000789_250--Hb_000537_050 Hb_001369_130 Hb_001369_130 Hb_000789_250--Hb_001369_130 Hb_004586_220 Hb_004586_220 Hb_000789_250--Hb_004586_220 Hb_061878_010 Hb_061878_010 Hb_140049_080--Hb_061878_010 Hb_006355_090 Hb_006355_090 Hb_140049_080--Hb_006355_090 Hb_004109_370 Hb_004109_370 Hb_140049_080--Hb_004109_370 Hb_000037_220 Hb_000037_220 Hb_140049_080--Hb_000037_220 Hb_140049_080--Hb_009615_170 Hb_001318_020 Hb_001318_020 Hb_140049_080--Hb_001318_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.7619 19.8421 13.6072 10.8115 14.5298 16.0541
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.21959 6.03157 14.7191 22.7052 15.5397

CAGE analysis