Hb_001318_020

Information

Type -
Description -
Location Contig1318: 37981-41564
Sequence    

Annotation

kegg
ID pop:POPTR_0014s10940g
description POPTRDRAFT_664277; hypothetical protein
nr
ID XP_007051264.1
description HAT dimerization domain-containing protein isoform 2 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061DTJ8
description HAT dimerization domain-containing protein isoform 2 OS=Theobroma cacao GN=TCM_004927 PE=4 SV=1
Gene Ontology
ID GO:0003677
description hat dimerization domain-containing protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09191: 37743-39664 , PASA_asmbl_09192: 39854-41541
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001318_020 0.0 - - HAT dimerization domain-containing protein isoform 2 [Theobroma cacao]
2 Hb_009615_170 0.0684426996 - - PREDICTED: sphingoid long-chain bases kinase 1 isoform X1 [Jatropha curcas]
3 Hb_006355_090 0.0687742502 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
4 Hb_140049_080 0.0694289172 - - PREDICTED: probable RNA helicase SDE3 [Jatropha curcas]
5 Hb_001377_160 0.0697495795 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
6 Hb_000130_020 0.0754810259 - - Phosphoenolpyruvate carboxylase, putative [Ricinus communis]
7 Hb_061878_010 0.0794779878 - - hypothetical protein CISIN_1g0094072mg, partial [Citrus sinensis]
8 Hb_003120_080 0.0796754934 - - PREDICTED: COPII coat assembly protein SEC16 isoform X1 [Jatropha curcas]
9 Hb_004586_290 0.081142013 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
10 Hb_007635_030 0.0814487554 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
11 Hb_001369_130 0.0819901054 - - PREDICTED: autophagy-related protein 3 isoform X1 [Jatropha curcas]
12 Hb_145880_010 0.0835022441 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
13 Hb_000703_150 0.0853418199 - - PREDICTED: F-box/LRR-repeat MAX2 homolog A [Jatropha curcas]
14 Hb_004668_060 0.0859939054 - - PREDICTED: probable apyrase 6 isoform X1 [Jatropha curcas]
15 Hb_001821_090 0.0861622201 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
16 Hb_009083_070 0.0868181588 - - PREDICTED: uncharacterized protein LOC105639870 [Jatropha curcas]
17 Hb_000139_130 0.0869839234 - - PREDICTED: chloride channel protein CLC-d isoform X1 [Jatropha curcas]
18 Hb_001033_050 0.0872123882 - - PREDICTED: acetylornithine deacetylase [Jatropha curcas]
19 Hb_010053_030 0.0873632699 - - PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase [Jatropha curcas]
20 Hb_001301_170 0.087900741 - - PREDICTED: purple acid phosphatase 18 [Jatropha curcas]

Gene co-expression network

sample Hb_001318_020 Hb_001318_020 Hb_009615_170 Hb_009615_170 Hb_001318_020--Hb_009615_170 Hb_006355_090 Hb_006355_090 Hb_001318_020--Hb_006355_090 Hb_140049_080 Hb_140049_080 Hb_001318_020--Hb_140049_080 Hb_001377_160 Hb_001377_160 Hb_001318_020--Hb_001377_160 Hb_000130_020 Hb_000130_020 Hb_001318_020--Hb_000130_020 Hb_061878_010 Hb_061878_010 Hb_001318_020--Hb_061878_010 Hb_001821_090 Hb_001821_090 Hb_009615_170--Hb_001821_090 Hb_012395_140 Hb_012395_140 Hb_009615_170--Hb_012395_140 Hb_004884_150 Hb_004884_150 Hb_009615_170--Hb_004884_150 Hb_159558_010 Hb_159558_010 Hb_009615_170--Hb_159558_010 Hb_000579_230 Hb_000579_230 Hb_009615_170--Hb_000579_230 Hb_000174_060 Hb_000174_060 Hb_009615_170--Hb_000174_060 Hb_006355_090--Hb_140049_080 Hb_006355_090--Hb_061878_010 Hb_000369_130 Hb_000369_130 Hb_006355_090--Hb_000369_130 Hb_002815_030 Hb_002815_030 Hb_006355_090--Hb_002815_030 Hb_000089_120 Hb_000089_120 Hb_006355_090--Hb_000089_120 Hb_140049_080--Hb_061878_010 Hb_004109_370 Hb_004109_370 Hb_140049_080--Hb_004109_370 Hb_000037_220 Hb_000037_220 Hb_140049_080--Hb_000037_220 Hb_140049_080--Hb_009615_170 Hb_003943_010 Hb_003943_010 Hb_001377_160--Hb_003943_010 Hb_004668_060 Hb_004668_060 Hb_001377_160--Hb_004668_060 Hb_003120_080 Hb_003120_080 Hb_001377_160--Hb_003120_080 Hb_000398_080 Hb_000398_080 Hb_001377_160--Hb_000398_080 Hb_003498_120 Hb_003498_120 Hb_001377_160--Hb_003498_120 Hb_000139_130 Hb_000139_130 Hb_001377_160--Hb_000139_130 Hb_000635_030 Hb_000635_030 Hb_000130_020--Hb_000635_030 Hb_178968_050 Hb_178968_050 Hb_000130_020--Hb_178968_050 Hb_000120_280 Hb_000120_280 Hb_000130_020--Hb_000120_280 Hb_000130_020--Hb_140049_080 Hb_141069_010 Hb_141069_010 Hb_000130_020--Hb_141069_010 Hb_061878_010--Hb_004109_370 Hb_061878_010--Hb_000139_130 Hb_012092_060 Hb_012092_060 Hb_061878_010--Hb_012092_060 Hb_061878_010--Hb_000037_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.1738 15.7715 7.50364 11.9938 13.1639 10.7575
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.93991 5.17325 8.55833 15.2372 6.24589

CAGE analysis