Hb_000037_220

Information

Type -
Description -
Location Contig37: 393587-398986
Sequence    

Annotation

kegg
ID rcu:RCOM_0416040
description expressed protein, putative
nr
ID XP_012081445.1
description PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]
swissprot
ID Q9SJ40
description Vacuolar protein-sorting-associated protein 11 homolog OS=Arabidopsis thaliana GN=VPS11 PE=1 SV=1
trembl
ID A0A067KCE8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18484 PE=4 SV=1
Gene Ontology
ID GO:0009705
description vacuolar protein-sorting-associated protein 11 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38022: 393777-398981
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000037_220 0.0 - - PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]
2 Hb_005563_060 0.0558711524 - - PREDICTED: coatomer subunit alpha-1 [Jatropha curcas]
3 Hb_000556_220 0.0567257244 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Jatropha curcas]
4 Hb_000003_100 0.0604281996 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]
5 Hb_140049_080 0.0644485209 - - PREDICTED: probable RNA helicase SDE3 [Jatropha curcas]
6 Hb_000094_310 0.0679858993 - - PREDICTED: uncharacterized membrane protein At1g75140 [Jatropha curcas]
7 Hb_041327_010 0.0701289807 - - PREDICTED: la-related protein 1A isoform X1 [Jatropha curcas]
8 Hb_011202_020 0.0706745212 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1 [Jatropha curcas]
9 Hb_012092_060 0.0708613003 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
10 Hb_004410_120 0.071996576 - - PREDICTED: uncharacterized protein LOC105633877 isoform X1 [Jatropha curcas]
11 Hb_061878_010 0.0720095948 - - hypothetical protein CISIN_1g0094072mg, partial [Citrus sinensis]
12 Hb_004645_070 0.0729505744 - - PREDICTED: beta-1,3-galactosyltransferase 15 [Jatropha curcas]
13 Hb_003216_090 0.0743130702 - - PREDICTED: nuclear pore complex protein NUP133 isoform X1 [Jatropha curcas]
14 Hb_001628_070 0.076497117 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_005568_040 0.0774152714 - - PREDICTED: uncharacterized protein LOC105628163 isoform X2 [Jatropha curcas]
16 Hb_005656_040 0.0801785172 desease resistance Gene Name: T2SE ATP-dependent RNA helicase, putative [Ricinus communis]
17 Hb_005357_260 0.0813008813 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
18 Hb_000665_230 0.0830368328 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
19 Hb_009615_170 0.0834494778 - - PREDICTED: sphingoid long-chain bases kinase 1 isoform X1 [Jatropha curcas]
20 Hb_001754_040 0.0841663642 transcription factor TF Family: TRAF PREDICTED: uncharacterized protein LOC105643434 [Jatropha curcas]

Gene co-expression network

sample Hb_000037_220 Hb_000037_220 Hb_005563_060 Hb_005563_060 Hb_000037_220--Hb_005563_060 Hb_000556_220 Hb_000556_220 Hb_000037_220--Hb_000556_220 Hb_000003_100 Hb_000003_100 Hb_000037_220--Hb_000003_100 Hb_140049_080 Hb_140049_080 Hb_000037_220--Hb_140049_080 Hb_000094_310 Hb_000094_310 Hb_000037_220--Hb_000094_310 Hb_041327_010 Hb_041327_010 Hb_000037_220--Hb_041327_010 Hb_005563_060--Hb_000003_100 Hb_001377_350 Hb_001377_350 Hb_005563_060--Hb_001377_350 Hb_003216_090 Hb_003216_090 Hb_005563_060--Hb_003216_090 Hb_000665_230 Hb_000665_230 Hb_005563_060--Hb_000665_230 Hb_012092_060 Hb_012092_060 Hb_005563_060--Hb_012092_060 Hb_085781_020 Hb_085781_020 Hb_000556_220--Hb_085781_020 Hb_002311_100 Hb_002311_100 Hb_000556_220--Hb_002311_100 Hb_004019_120 Hb_004019_120 Hb_000556_220--Hb_004019_120 Hb_140627_020 Hb_140627_020 Hb_000556_220--Hb_140627_020 Hb_003060_060 Hb_003060_060 Hb_000556_220--Hb_003060_060 Hb_000003_100--Hb_003216_090 Hb_000331_580 Hb_000331_580 Hb_000003_100--Hb_000331_580 Hb_002890_130 Hb_002890_130 Hb_000003_100--Hb_002890_130 Hb_012286_040 Hb_012286_040 Hb_000003_100--Hb_012286_040 Hb_000008_240 Hb_000008_240 Hb_000003_100--Hb_000008_240 Hb_061878_010 Hb_061878_010 Hb_140049_080--Hb_061878_010 Hb_006355_090 Hb_006355_090 Hb_140049_080--Hb_006355_090 Hb_004109_370 Hb_004109_370 Hb_140049_080--Hb_004109_370 Hb_009615_170 Hb_009615_170 Hb_140049_080--Hb_009615_170 Hb_001318_020 Hb_001318_020 Hb_140049_080--Hb_001318_020 Hb_000696_050 Hb_000696_050 Hb_000094_310--Hb_000696_050 Hb_003078_020 Hb_003078_020 Hb_000094_310--Hb_003078_020 Hb_003729_030 Hb_003729_030 Hb_000094_310--Hb_003729_030 Hb_000094_310--Hb_002311_100 Hb_000094_310--Hb_009615_170 Hb_002639_080 Hb_002639_080 Hb_041327_010--Hb_002639_080 Hb_041327_010--Hb_012286_040 Hb_000261_480 Hb_000261_480 Hb_041327_010--Hb_000261_480 Hb_000230_260 Hb_000230_260 Hb_041327_010--Hb_000230_260 Hb_000069_120 Hb_000069_120 Hb_041327_010--Hb_000069_120 Hb_000537_050 Hb_000537_050 Hb_041327_010--Hb_000537_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.612 21.1882 9.71883 16.1097 12.7974 14.9574
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.56709 5.11435 13.6519 19.4829 14.2852

CAGE analysis