Hb_000089_120

Information

Type -
Description -
Location Contig89: 88601-89638
Sequence    

Annotation

kegg
ID rcu:RCOM_0723330
description WD-repeat protein, putative (EC:2.3.1.48)
nr
ID XP_002524865.1
description WD-repeat protein, putative [Ricinus communis]
swissprot
ID Q96DI7
description U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens GN=SNRNP40 PE=1 SV=1
trembl
ID B9SFU6
description WD-repeat protein, putative OS=Ricinus communis GN=RCOM_0723330 PE=4 SV=1
Gene Ontology
ID GO:0019013
description u5 small nuclear ribonucleoprotein 40 kda protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61555: 88414-90649 , PASA_asmbl_61556: 89573-90634
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000089_120 0.0 - - WD-repeat protein, putative [Ricinus communis]
2 Hb_116349_070 0.0615912383 - - hypothetical protein JCGZ_21753 [Jatropha curcas]
3 Hb_000261_240 0.0622459978 - - RecName: Full=Elongation factor 1-alpha; Short=EF-1-alpha [Manihot esculenta]
4 Hb_007657_020 0.0628829125 - - PREDICTED: PRA1 family protein H isoform X1 [Jatropha curcas]
5 Hb_005588_090 0.0643930085 - - hypothetical protein CICLE_v10003480mg [Citrus clementina]
6 Hb_002784_020 0.0658921274 - - PREDICTED: probable protein arginine N-methyltransferase 3 [Jatropha curcas]
7 Hb_000398_080 0.0663620833 - - tip120, putative [Ricinus communis]
8 Hb_002681_090 0.0666374968 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
9 Hb_000011_100 0.0681880938 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]
10 Hb_001235_140 0.0691226291 - - PREDICTED: protein arginine N-methyltransferase 1.6 [Jatropha curcas]
11 Hb_006355_090 0.0700095587 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
12 Hb_005289_040 0.0711334507 - - poly(A) polymerase, putative [Ricinus communis]
13 Hb_000182_040 0.0720803497 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 24 [Jatropha curcas]
14 Hb_000163_220 0.0722240267 - - hypothetical protein CISIN_1g022301mg [Citrus sinensis]
15 Hb_003464_080 0.0722644071 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
16 Hb_000390_320 0.0728890113 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-1b-like [Jatropha curcas]
17 Hb_028872_090 0.0734532166 - - PREDICTED: urease [Jatropha curcas]
18 Hb_004267_040 0.0740488787 - - PREDICTED: transcriptional adapter ADA2a [Jatropha curcas]
19 Hb_002375_010 0.074389359 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
20 Hb_164544_010 0.0756847927 - - PREDICTED: protein arginine N-methyltransferase 1.5 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000089_120 Hb_000089_120 Hb_116349_070 Hb_116349_070 Hb_000089_120--Hb_116349_070 Hb_000261_240 Hb_000261_240 Hb_000089_120--Hb_000261_240 Hb_007657_020 Hb_007657_020 Hb_000089_120--Hb_007657_020 Hb_005588_090 Hb_005588_090 Hb_000089_120--Hb_005588_090 Hb_002784_020 Hb_002784_020 Hb_000089_120--Hb_002784_020 Hb_000398_080 Hb_000398_080 Hb_000089_120--Hb_000398_080 Hb_116349_070--Hb_005588_090 Hb_004267_040 Hb_004267_040 Hb_116349_070--Hb_004267_040 Hb_000120_280 Hb_000120_280 Hb_116349_070--Hb_000120_280 Hb_000617_100 Hb_000617_100 Hb_116349_070--Hb_000617_100 Hb_000120_430 Hb_000120_430 Hb_116349_070--Hb_000120_430 Hb_000261_240--Hb_007657_020 Hb_002311_290 Hb_002311_290 Hb_000261_240--Hb_002311_290 Hb_000261_240--Hb_000398_080 Hb_005460_050 Hb_005460_050 Hb_000261_240--Hb_005460_050 Hb_005723_020 Hb_005723_020 Hb_000261_240--Hb_005723_020 Hb_007657_020--Hb_000398_080 Hb_002681_090 Hb_002681_090 Hb_007657_020--Hb_002681_090 Hb_007657_020--Hb_002311_290 Hb_000603_030 Hb_000603_030 Hb_007657_020--Hb_000603_030 Hb_005588_090--Hb_004267_040 Hb_005289_040 Hb_005289_040 Hb_005588_090--Hb_005289_040 Hb_004785_100 Hb_004785_100 Hb_005588_090--Hb_004785_100 Hb_001821_160 Hb_001821_160 Hb_005588_090--Hb_001821_160 Hb_017862_020 Hb_017862_020 Hb_002784_020--Hb_017862_020 Hb_164544_010 Hb_164544_010 Hb_002784_020--Hb_164544_010 Hb_002375_010 Hb_002375_010 Hb_002784_020--Hb_002375_010 Hb_000696_230 Hb_000696_230 Hb_002784_020--Hb_000696_230 Hb_000617_180 Hb_000617_180 Hb_002784_020--Hb_000617_180 Hb_028872_090 Hb_028872_090 Hb_002784_020--Hb_028872_090 Hb_002805_190 Hb_002805_190 Hb_000398_080--Hb_002805_190 Hb_000011_100 Hb_000011_100 Hb_000398_080--Hb_000011_100 Hb_000398_080--Hb_000603_030 Hb_000398_080--Hb_004267_040 Hb_000563_130 Hb_000563_130 Hb_000398_080--Hb_000563_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.41559 9.30306 8.68433 8.05345 9.4428 10.7148
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.41925 6.39355 5.33647 11.8658 5.38603

CAGE analysis