Hb_005723_020

Information

Type -
Description -
Location Contig5723: 11624-33325
Sequence    

Annotation

kegg
ID rcu:RCOM_0001270
description hypothetical protein
nr
ID XP_002533153.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9M2T1
description AP3-complex subunit beta-A OS=Arabidopsis thaliana GN=AP3BA PE=2 SV=2
trembl
ID B9T4I4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0001270 PE=4 SV=1
Gene Ontology
ID GO:0030123
description ap3-complex subunit beta-a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49382: 13680-22420 , PASA_asmbl_49384: 28819-29070 , PASA_asmbl_49385: 29112-33295
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005723_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002686_040 0.061402793 - - PREDICTED: T-complex protein 1 subunit theta [Jatropha curcas]
3 Hb_103747_020 0.0629308177 - - calcium dependent protein kinase, partial [Hevea brasiliensis]
4 Hb_008226_090 0.0642259995 - - PREDICTED: reticulon-like protein B16 isoform X1 [Jatropha curcas]
5 Hb_001135_120 0.0704220656 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
6 Hb_027654_020 0.0704870615 - - PREDICTED: LIMR family protein At5g01460 [Jatropha curcas]
7 Hb_000933_010 0.0732482133 - - -
8 Hb_000317_510 0.0740528895 - - PREDICTED: long chain base biosynthesis protein 1 [Jatropha curcas]
9 Hb_184798_080 0.0748039459 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
10 Hb_000261_240 0.0754201961 - - RecName: Full=Elongation factor 1-alpha; Short=EF-1-alpha [Manihot esculenta]
11 Hb_007800_020 0.0769844128 - - PREDICTED: probable arabinosyltransferase ARAD1 isoform X1 [Jatropha curcas]
12 Hb_000236_490 0.0775727562 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]
13 Hb_004204_130 0.0778120198 - - PREDICTED: uncharacterized protein LOC103930912 [Pyrus x bretschneideri]
14 Hb_004586_060 0.0787451559 - - PREDICTED: AP-4 complex subunit mu [Jatropha curcas]
15 Hb_000640_070 0.0808540232 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
16 Hb_004129_070 0.0813402578 - - PREDICTED: conserved oligomeric Golgi complex subunit 5 [Jatropha curcas]
17 Hb_008568_020 0.0824215955 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]
18 Hb_006501_010 0.083458245 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A isoform X1 [Populus euphratica]
19 Hb_005460_050 0.0835793102 - - COR413-PM2, putative [Ricinus communis]
20 Hb_000373_080 0.0837130971 - - PREDICTED: serine decarboxylase [Jatropha curcas]

Gene co-expression network

sample Hb_005723_020 Hb_005723_020 Hb_002686_040 Hb_002686_040 Hb_005723_020--Hb_002686_040 Hb_103747_020 Hb_103747_020 Hb_005723_020--Hb_103747_020 Hb_008226_090 Hb_008226_090 Hb_005723_020--Hb_008226_090 Hb_001135_120 Hb_001135_120 Hb_005723_020--Hb_001135_120 Hb_027654_020 Hb_027654_020 Hb_005723_020--Hb_027654_020 Hb_000933_010 Hb_000933_010 Hb_005723_020--Hb_000933_010 Hb_002686_040--Hb_103747_020 Hb_006618_090 Hb_006618_090 Hb_002686_040--Hb_006618_090 Hb_000174_060 Hb_000174_060 Hb_002686_040--Hb_000174_060 Hb_007894_160 Hb_007894_160 Hb_002686_040--Hb_007894_160 Hb_000398_080 Hb_000398_080 Hb_002686_040--Hb_000398_080 Hb_000317_510 Hb_000317_510 Hb_103747_020--Hb_000317_510 Hb_002014_040 Hb_002014_040 Hb_103747_020--Hb_002014_040 Hb_000610_040 Hb_000610_040 Hb_103747_020--Hb_000610_040 Hb_103747_020--Hb_008226_090 Hb_008226_090--Hb_002014_040 Hb_008568_020 Hb_008568_020 Hb_008226_090--Hb_008568_020 Hb_008226_090--Hb_001135_120 Hb_003912_040 Hb_003912_040 Hb_008226_090--Hb_003912_040 Hb_004129_070 Hb_004129_070 Hb_001135_120--Hb_004129_070 Hb_002325_040 Hb_002325_040 Hb_001135_120--Hb_002325_040 Hb_009083_070 Hb_009083_070 Hb_001135_120--Hb_009083_070 Hb_003096_060 Hb_003096_060 Hb_001135_120--Hb_003096_060 Hb_001033_050 Hb_001033_050 Hb_001135_120--Hb_001033_050 Hb_184798_080 Hb_184798_080 Hb_001135_120--Hb_184798_080 Hb_000120_910 Hb_000120_910 Hb_027654_020--Hb_000120_910 Hb_000300_550 Hb_000300_550 Hb_027654_020--Hb_000300_550 Hb_000529_060 Hb_000529_060 Hb_027654_020--Hb_000529_060 Hb_027654_020--Hb_103747_020 Hb_000046_600 Hb_000046_600 Hb_027654_020--Hb_000046_600 Hb_005460_050 Hb_005460_050 Hb_000933_010--Hb_005460_050 Hb_003897_040 Hb_003897_040 Hb_000933_010--Hb_003897_040 Hb_003549_090 Hb_003549_090 Hb_000933_010--Hb_003549_090 Hb_002398_030 Hb_002398_030 Hb_000933_010--Hb_002398_030 Hb_000933_010--Hb_008226_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.76753 6.48651 7.32364 6.7869 5.5855 6.44962
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.0639 2.66784 2.94143 5.62955 3.75358

CAGE analysis