Hb_000933_010

Information

Type -
Description -
Location Contig933: 25005-28797
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62879: 25317-28769
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000933_010 0.0 - - -
2 Hb_005460_050 0.0540930473 - - COR413-PM2, putative [Ricinus communis]
3 Hb_003897_040 0.055352259 - - translocon-associated protein, beta subunit precursor, putative [Ricinus communis]
4 Hb_003549_090 0.0686750307 - - PREDICTED: rhodanese-like domain-containing protein 6 [Jatropha curcas]
5 Hb_005723_020 0.0732482133 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002398_030 0.0739222846 - - amino acid binding protein, putative [Ricinus communis]
7 Hb_008226_090 0.0751073345 - - PREDICTED: reticulon-like protein B16 isoform X1 [Jatropha curcas]
8 Hb_000101_380 0.0756299231 - - PREDICTED: clathrin light chain 2-like isoform X2 [Populus euphratica]
9 Hb_001635_160 0.0756350805 - - hypothetical protein JCGZ_24810 [Jatropha curcas]
10 Hb_012215_010 0.0759630338 - - PREDICTED: YTH domain-containing family protein 1 [Populus euphratica]
11 Hb_000007_280 0.076305771 - - hypothetical protein VITISV_000066 [Vitis vinifera]
12 Hb_001135_120 0.0778428355 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
13 Hb_011310_130 0.0790406275 - - DEAD/DEAH box RNA helicase family protein isoform 1 [Theobroma cacao]
14 Hb_000776_100 0.0811828305 - - Cleavage stimulation factor 50 kDa subunit, putative [Ricinus communis]
15 Hb_008568_020 0.0818162407 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]
16 Hb_005000_320 0.081952694 - - PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]
17 Hb_001377_310 0.0819960552 transcription factor TF Family: Coactivator p15 PREDICTED: uncharacterized protein LOC105642839 [Jatropha curcas]
18 Hb_032990_010 0.0824191405 - - PREDICTED: fanconi-associated nuclease 1 homolog [Jatropha curcas]
19 Hb_003096_060 0.0825802245 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
20 Hb_184798_080 0.08291051 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]

Gene co-expression network

sample Hb_000933_010 Hb_000933_010 Hb_005460_050 Hb_005460_050 Hb_000933_010--Hb_005460_050 Hb_003897_040 Hb_003897_040 Hb_000933_010--Hb_003897_040 Hb_003549_090 Hb_003549_090 Hb_000933_010--Hb_003549_090 Hb_005723_020 Hb_005723_020 Hb_000933_010--Hb_005723_020 Hb_002398_030 Hb_002398_030 Hb_000933_010--Hb_002398_030 Hb_008226_090 Hb_008226_090 Hb_000933_010--Hb_008226_090 Hb_001377_310 Hb_001377_310 Hb_005460_050--Hb_001377_310 Hb_032990_010 Hb_032990_010 Hb_005460_050--Hb_032990_010 Hb_001635_160 Hb_001635_160 Hb_005460_050--Hb_001635_160 Hb_005460_050--Hb_003897_040 Hb_007062_040 Hb_007062_040 Hb_005460_050--Hb_007062_040 Hb_003038_120 Hb_003038_120 Hb_003897_040--Hb_003038_120 Hb_003897_040--Hb_002398_030 Hb_000261_230 Hb_000261_230 Hb_003897_040--Hb_000261_230 Hb_003897_040--Hb_032990_010 Hb_003549_090--Hb_002398_030 Hb_011310_130 Hb_011310_130 Hb_003549_090--Hb_011310_130 Hb_000777_050 Hb_000777_050 Hb_003549_090--Hb_000777_050 Hb_000007_280 Hb_000007_280 Hb_003549_090--Hb_000007_280 Hb_011310_210 Hb_011310_210 Hb_003549_090--Hb_011310_210 Hb_058999_030 Hb_058999_030 Hb_003549_090--Hb_058999_030 Hb_002686_040 Hb_002686_040 Hb_005723_020--Hb_002686_040 Hb_103747_020 Hb_103747_020 Hb_005723_020--Hb_103747_020 Hb_005723_020--Hb_008226_090 Hb_001135_120 Hb_001135_120 Hb_005723_020--Hb_001135_120 Hb_027654_020 Hb_027654_020 Hb_005723_020--Hb_027654_020 Hb_008120_030 Hb_008120_030 Hb_002398_030--Hb_008120_030 Hb_000445_050 Hb_000445_050 Hb_002398_030--Hb_000445_050 Hb_002398_030--Hb_058999_030 Hb_000035_110 Hb_000035_110 Hb_002398_030--Hb_000035_110 Hb_002398_030--Hb_001635_160 Hb_002014_040 Hb_002014_040 Hb_008226_090--Hb_002014_040 Hb_008568_020 Hb_008568_020 Hb_008226_090--Hb_008568_020 Hb_008226_090--Hb_001135_120 Hb_008226_090--Hb_103747_020 Hb_003912_040 Hb_003912_040 Hb_008226_090--Hb_003912_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.4481 40.9433 44.2421 50.9397 40.3587 55.5886
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.3223 21.5401 20.6588 33.649 23.8205

CAGE analysis