Hb_012146_050

Information

Type -
Description -
Location Contig12146: 51456-63019
Sequence    

Annotation

kegg
ID pop:POPTR_0002s07830g
description POPTRDRAFT_551406; preprotein translocase secA
nr
ID XP_012078311.1
description PREDICTED: protein translocase subunit SECA2, chloroplastic [Jatropha curcas]
swissprot
ID D8WUA4
description Protein translocase subunit SECA2, chloroplastic OS=Arabidopsis thaliana GN=SECA2 PE=2 SV=1
trembl
ID A0A067K9R4
description Protein translocase subunit SecA OS=Jatropha curcas GN=JCGZ_12144 PE=3 SV=1
Gene Ontology
ID GO:0016020
description preprotein translocase family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06569: 53959-54593 , PASA_asmbl_06570: 56374-56610 , PASA_asmbl_06571: 55567-62768
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012146_050 0.0 - - PREDICTED: protein translocase subunit SECA2, chloroplastic [Jatropha curcas]
2 Hb_001431_120 0.077167517 - - PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like [Jatropha curcas]
3 Hb_008114_050 0.0826741975 - - hypothetical protein POPTR_0006s02430g [Populus trichocarpa]
4 Hb_005402_040 0.0873527009 - - PREDICTED: replication factor C subunit 1 [Jatropha curcas]
5 Hb_143489_010 0.0924375385 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 50 isoform X2 [Jatropha curcas]
6 Hb_143489_020 0.0947565382 - - -
7 Hb_000788_070 0.0957879309 - - PREDICTED: pentatricopeptide repeat-containing protein At1g10270 [Jatropha curcas]
8 Hb_001754_040 0.0958222413 transcription factor TF Family: TRAF PREDICTED: uncharacterized protein LOC105643434 [Jatropha curcas]
9 Hb_088144_020 0.0967043199 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 6-like isoform X1 [Jatropha curcas]
10 Hb_003177_060 0.0991148923 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X1 [Jatropha curcas]
11 Hb_003058_060 0.0994403048 - - PREDICTED: proteasome-associated protein ECM29 homolog [Jatropha curcas]
12 Hb_001381_050 0.099560812 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
13 Hb_002784_010 0.0998968587 - - DNA-directed RNA polymerase I subunit, putative [Ricinus communis]
14 Hb_001341_180 0.1018951194 - - PREDICTED: transmembrane protein 209 [Jatropha curcas]
15 Hb_000256_020 0.1019967721 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
16 Hb_012184_060 0.1035356865 - - PREDICTED: nuclear pore complex protein NUP1 isoform X1 [Jatropha curcas]
17 Hb_000025_710 0.1040785196 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
18 Hb_000740_100 0.1041317543 - - calpain, putative [Ricinus communis]
19 Hb_027472_220 0.104521724 - - PREDICTED: nucleolar complex protein 3 homolog isoform X1 [Jatropha curcas]
20 Hb_000579_230 0.1051304037 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]

Gene co-expression network

sample Hb_012146_050 Hb_012146_050 Hb_001431_120 Hb_001431_120 Hb_012146_050--Hb_001431_120 Hb_008114_050 Hb_008114_050 Hb_012146_050--Hb_008114_050 Hb_005402_040 Hb_005402_040 Hb_012146_050--Hb_005402_040 Hb_143489_010 Hb_143489_010 Hb_012146_050--Hb_143489_010 Hb_143489_020 Hb_143489_020 Hb_012146_050--Hb_143489_020 Hb_000788_070 Hb_000788_070 Hb_012146_050--Hb_000788_070 Hb_001341_180 Hb_001341_180 Hb_001431_120--Hb_001341_180 Hb_001431_120--Hb_005402_040 Hb_003645_060 Hb_003645_060 Hb_001431_120--Hb_003645_060 Hb_004064_050 Hb_004064_050 Hb_001431_120--Hb_004064_050 Hb_001381_050 Hb_001381_050 Hb_001431_120--Hb_001381_050 Hb_028872_070 Hb_028872_070 Hb_008114_050--Hb_028872_070 Hb_000256_020 Hb_000256_020 Hb_008114_050--Hb_000256_020 Hb_008114_050--Hb_001431_120 Hb_008114_050--Hb_003645_060 Hb_001754_040 Hb_001754_040 Hb_008114_050--Hb_001754_040 Hb_027472_220 Hb_027472_220 Hb_005402_040--Hb_027472_220 Hb_011202_020 Hb_011202_020 Hb_005402_040--Hb_011202_020 Hb_005357_260 Hb_005357_260 Hb_005402_040--Hb_005357_260 Hb_003124_160 Hb_003124_160 Hb_005402_040--Hb_003124_160 Hb_000025_710 Hb_000025_710 Hb_005402_040--Hb_000025_710 Hb_000395_070 Hb_000395_070 Hb_005402_040--Hb_000395_070 Hb_002631_140 Hb_002631_140 Hb_143489_010--Hb_002631_140 Hb_143489_010--Hb_143489_020 Hb_006573_170 Hb_006573_170 Hb_143489_010--Hb_006573_170 Hb_003124_100 Hb_003124_100 Hb_143489_010--Hb_003124_100 Hb_018118_010 Hb_018118_010 Hb_143489_010--Hb_018118_010 Hb_143489_010--Hb_000025_710 Hb_012184_060 Hb_012184_060 Hb_143489_020--Hb_012184_060 Hb_143489_020--Hb_000788_070 Hb_001662_180 Hb_001662_180 Hb_143489_020--Hb_001662_180 Hb_188063_010 Hb_188063_010 Hb_143489_020--Hb_188063_010 Hb_002784_110 Hb_002784_110 Hb_000788_070--Hb_002784_110 Hb_005496_110 Hb_005496_110 Hb_000788_070--Hb_005496_110 Hb_000265_230 Hb_000265_230 Hb_000788_070--Hb_000265_230 Hb_000788_070--Hb_000025_710 Hb_000183_020 Hb_000183_020 Hb_000788_070--Hb_000183_020 Hb_028487_010 Hb_028487_010 Hb_000788_070--Hb_028487_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.1366 3.89052 2.74963 1.40433 2.68768 4.25532
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.306 1.26933 2.01838 4.96754 3.52158

CAGE analysis