Hb_006573_170

Information

Type -
Description -
Location Contig6573: 109005-114639
Sequence    

Annotation

kegg
ID rcu:RCOM_1581950
description hypothetical protein
nr
ID XP_002513636.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RIR7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1581950 PE=4 SV=1
Gene Ontology
ID GO:0019013
description tic22-like family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52819: 109543-114609
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006573_170 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001959_270 0.0585825229 - - PREDICTED: DNA mismatch repair protein MSH1, mitochondrial isoform X1 [Jatropha curcas]
3 Hb_001989_050 0.0806499027 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 5 [Jatropha curcas]
4 Hb_001492_040 0.0834035337 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
5 Hb_002784_010 0.0834071949 - - DNA-directed RNA polymerase I subunit, putative [Ricinus communis]
6 Hb_005214_150 0.0848948568 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105636019 [Jatropha curcas]
7 Hb_143489_010 0.0854303382 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 50 isoform X2 [Jatropha curcas]
8 Hb_000027_050 0.0889048142 - - PREDICTED: uncharacterized protein LOC105636933 isoform X1 [Jatropha curcas]
9 Hb_002631_140 0.0921819243 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Jatropha curcas]
10 Hb_009476_090 0.0930958094 - - PREDICTED: anaphase-promoting complex subunit 1 [Jatropha curcas]
11 Hb_003124_160 0.0934141134 - - dynamin, putative [Ricinus communis]
12 Hb_012184_060 0.0946603758 - - PREDICTED: nuclear pore complex protein NUP1 isoform X1 [Jatropha curcas]
13 Hb_000786_040 0.0971073946 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 17 [Jatropha curcas]
14 Hb_003106_030 0.0985253822 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
15 Hb_000176_130 0.098685544 - - PREDICTED: probable splicing factor 3A subunit 1 [Jatropha curcas]
16 Hb_005725_170 0.098940796 - - PREDICTED: pre-mRNA-processing protein 40A isoform X2 [Jatropha curcas]
17 Hb_179154_020 0.0993270363 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
18 Hb_000086_690 0.1002765932 - - PREDICTED: splicing factor 3B subunit 1 [Jatropha curcas]
19 Hb_000025_710 0.1013689598 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
20 Hb_005832_010 0.1022888903 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_006573_170 Hb_006573_170 Hb_001959_270 Hb_001959_270 Hb_006573_170--Hb_001959_270 Hb_001989_050 Hb_001989_050 Hb_006573_170--Hb_001989_050 Hb_001492_040 Hb_001492_040 Hb_006573_170--Hb_001492_040 Hb_002784_010 Hb_002784_010 Hb_006573_170--Hb_002784_010 Hb_005214_150 Hb_005214_150 Hb_006573_170--Hb_005214_150 Hb_143489_010 Hb_143489_010 Hb_006573_170--Hb_143489_010 Hb_179154_020 Hb_179154_020 Hb_001959_270--Hb_179154_020 Hb_001959_270--Hb_001492_040 Hb_007818_040 Hb_007818_040 Hb_001959_270--Hb_007818_040 Hb_001959_270--Hb_005214_150 Hb_000377_050 Hb_000377_050 Hb_001959_270--Hb_000377_050 Hb_000176_130 Hb_000176_130 Hb_001989_050--Hb_000176_130 Hb_001989_050--Hb_001492_040 Hb_000086_690 Hb_000086_690 Hb_001989_050--Hb_000086_690 Hb_001989_050--Hb_005214_150 Hb_000836_020 Hb_000836_020 Hb_001989_050--Hb_000836_020 Hb_001723_140 Hb_001723_140 Hb_001492_040--Hb_001723_140 Hb_009476_090 Hb_009476_090 Hb_001492_040--Hb_009476_090 Hb_007283_030 Hb_007283_030 Hb_001492_040--Hb_007283_030 Hb_002784_010--Hb_005214_150 Hb_000025_710 Hb_000025_710 Hb_002784_010--Hb_000025_710 Hb_000786_040 Hb_000786_040 Hb_002784_010--Hb_000786_040 Hb_000010_360 Hb_000010_360 Hb_002784_010--Hb_000010_360 Hb_001191_120 Hb_001191_120 Hb_002784_010--Hb_001191_120 Hb_000261_030 Hb_000261_030 Hb_002784_010--Hb_000261_030 Hb_011671_230 Hb_011671_230 Hb_005214_150--Hb_011671_230 Hb_000327_080 Hb_000327_080 Hb_005214_150--Hb_000327_080 Hb_000703_130 Hb_000703_130 Hb_005214_150--Hb_000703_130 Hb_155159_010 Hb_155159_010 Hb_005214_150--Hb_155159_010 Hb_002631_140 Hb_002631_140 Hb_143489_010--Hb_002631_140 Hb_143489_020 Hb_143489_020 Hb_143489_010--Hb_143489_020 Hb_003124_100 Hb_003124_100 Hb_143489_010--Hb_003124_100 Hb_018118_010 Hb_018118_010 Hb_143489_010--Hb_018118_010 Hb_143489_010--Hb_000025_710
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.7616 24.8337 11.761 11.7363 15.2942 24.6167
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.51704 4.63519 3.93515 17.0419 20.526

CAGE analysis