Hb_001492_040

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig1492: 116118-120893
Sequence    

Annotation

kegg
ID rcu:RCOM_1482450
description hypothetical protein
nr
ID XP_002524239.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SX38
description Putative disease resistance protein At1g50180 OS=Arabidopsis thaliana GN=At1g50180 PE=3 SV=2
trembl
ID B9SE20
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1482450 PE=4 SV=1
Gene Ontology
ID GO:0003824
description disease resistance protein rpp8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12419: 116128-118133 , PASA_asmbl_12420: 118196-118461
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001492_040 0.0 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
2 Hb_001959_270 0.0628807393 - - PREDICTED: DNA mismatch repair protein MSH1, mitochondrial isoform X1 [Jatropha curcas]
3 Hb_006573_170 0.0834035337 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001723_140 0.0861128684 - - PREDICTED: importin beta-like SAD2 homolog isoform X2 [Jatropha curcas]
5 Hb_009476_090 0.0864255292 - - PREDICTED: anaphase-promoting complex subunit 1 [Jatropha curcas]
6 Hb_001989_050 0.0875252316 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 5 [Jatropha curcas]
7 Hb_007283_030 0.0879774408 - - PREDICTED: pre-mRNA-processing protein 40C-like [Malus domestica]
8 Hb_011920_020 0.0888711786 - - PREDICTED: uncharacterized protein LOC105645397 [Jatropha curcas]
9 Hb_011202_030 0.0902265674 - - arsenite-resistance protein, putative [Ricinus communis]
10 Hb_005214_150 0.0902647764 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105636019 [Jatropha curcas]
11 Hb_155159_010 0.0907993981 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1 [Jatropha curcas]
12 Hb_000184_150 0.0911296476 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
13 Hb_000027_050 0.0917318714 - - PREDICTED: uncharacterized protein LOC105636933 isoform X1 [Jatropha curcas]
14 Hb_000256_020 0.0926444896 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
15 Hb_001935_160 0.0944185028 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]
16 Hb_000377_050 0.0975803493 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
17 Hb_002045_250 0.1010911858 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP63 isoform X3 [Jatropha curcas]
18 Hb_005832_010 0.1012664164 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
19 Hb_007818_040 0.1033765705 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 50 isoform X2 [Jatropha curcas]
20 Hb_003124_160 0.1037299028 - - dynamin, putative [Ricinus communis]

Gene co-expression network

sample Hb_001492_040 Hb_001492_040 Hb_001959_270 Hb_001959_270 Hb_001492_040--Hb_001959_270 Hb_006573_170 Hb_006573_170 Hb_001492_040--Hb_006573_170 Hb_001723_140 Hb_001723_140 Hb_001492_040--Hb_001723_140 Hb_009476_090 Hb_009476_090 Hb_001492_040--Hb_009476_090 Hb_001989_050 Hb_001989_050 Hb_001492_040--Hb_001989_050 Hb_007283_030 Hb_007283_030 Hb_001492_040--Hb_007283_030 Hb_001959_270--Hb_006573_170 Hb_179154_020 Hb_179154_020 Hb_001959_270--Hb_179154_020 Hb_007818_040 Hb_007818_040 Hb_001959_270--Hb_007818_040 Hb_005214_150 Hb_005214_150 Hb_001959_270--Hb_005214_150 Hb_000377_050 Hb_000377_050 Hb_001959_270--Hb_000377_050 Hb_006573_170--Hb_001989_050 Hb_002784_010 Hb_002784_010 Hb_006573_170--Hb_002784_010 Hb_006573_170--Hb_005214_150 Hb_143489_010 Hb_143489_010 Hb_006573_170--Hb_143489_010 Hb_001171_030 Hb_001171_030 Hb_001723_140--Hb_001171_030 Hb_013358_070 Hb_013358_070 Hb_001723_140--Hb_013358_070 Hb_001584_350 Hb_001584_350 Hb_001723_140--Hb_001584_350 Hb_003142_040 Hb_003142_040 Hb_001723_140--Hb_003142_040 Hb_000027_050 Hb_000027_050 Hb_001723_140--Hb_000027_050 Hb_000529_060 Hb_000529_060 Hb_001723_140--Hb_000529_060 Hb_009476_090--Hb_000377_050 Hb_005832_010 Hb_005832_010 Hb_009476_090--Hb_005832_010 Hb_000703_130 Hb_000703_130 Hb_009476_090--Hb_000703_130 Hb_004223_160 Hb_004223_160 Hb_009476_090--Hb_004223_160 Hb_000025_710 Hb_000025_710 Hb_009476_090--Hb_000025_710 Hb_009476_090--Hb_001959_270 Hb_000176_130 Hb_000176_130 Hb_001989_050--Hb_000176_130 Hb_000086_690 Hb_000086_690 Hb_001989_050--Hb_000086_690 Hb_001989_050--Hb_005214_150 Hb_000836_020 Hb_000836_020 Hb_001989_050--Hb_000836_020 Hb_007283_030--Hb_007818_040 Hb_155159_010 Hb_155159_010 Hb_007283_030--Hb_155159_010 Hb_011202_030 Hb_011202_030 Hb_007283_030--Hb_011202_030 Hb_000086_050 Hb_000086_050 Hb_007283_030--Hb_000086_050 Hb_007576_230 Hb_007576_230 Hb_007283_030--Hb_007576_230 Hb_007283_030--Hb_000377_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.39307 2.33709 1.40536 1.01043 0.982589 1.72438
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.502749 0.255236 0.414239 1.61572 1.54888

CAGE analysis