Hb_001989_050

Information

Type -
Description -
Location Contig1989: 105048-111913
Sequence    

Annotation

kegg
ID rcu:RCOM_0757130
description IAA-amino acid hydrolase ILR1 precursor, putative (EC:3.5.1.32)
nr
ID XP_012072817.1
description PREDICTED: IAA-amino acid hydrolase ILR1-like 5 [Jatropha curcas]
swissprot
ID O81641
description IAA-amino acid hydrolase ILR1-like 3 OS=Arabidopsis thaliana GN=ILL3 PE=2 SV=1
trembl
ID A0A067KZ83
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08266 PE=4 SV=1
Gene Ontology
ID GO:0016787
description iaa-amino acid hydrolase ilr1-like 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19948: 105228-111863 , PASA_asmbl_19949: 112739-113060
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001989_050 0.0 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 5 [Jatropha curcas]
2 Hb_006573_170 0.0806499027 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000176_130 0.0817888216 - - PREDICTED: probable splicing factor 3A subunit 1 [Jatropha curcas]
4 Hb_001492_040 0.0875252316 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
5 Hb_000086_690 0.0926622807 - - PREDICTED: splicing factor 3B subunit 1 [Jatropha curcas]
6 Hb_005214_150 0.0939093899 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105636019 [Jatropha curcas]
7 Hb_000836_020 0.0963406139 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
8 Hb_002375_110 0.0988331063 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
9 Hb_001959_270 0.1014639317 - - PREDICTED: DNA mismatch repair protein MSH1, mitochondrial isoform X1 [Jatropha curcas]
10 Hb_001488_270 0.1016652196 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
11 Hb_001401_060 0.1021557372 - - PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Jatropha curcas]
12 Hb_003124_160 0.1028219058 - - dynamin, putative [Ricinus communis]
13 Hb_000197_290 0.1036765993 - - PREDICTED: A-agglutinin anchorage subunit [Jatropha curcas]
14 Hb_002005_120 0.1041229726 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
15 Hb_011671_230 0.106935997 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003604_040 0.1071672676 - - Serine/threonine-protein kinase sepA [Morus notabilis]
17 Hb_000917_100 0.1087596607 - - PREDICTED: phosphoenolpyruvate carboxylase 4 [Jatropha curcas]
18 Hb_008749_030 0.1109511038 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
19 Hb_000184_150 0.1121851851 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
20 Hb_065500_030 0.1130858578 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Jatropha curcas]

Gene co-expression network

sample Hb_001989_050 Hb_001989_050 Hb_006573_170 Hb_006573_170 Hb_001989_050--Hb_006573_170 Hb_000176_130 Hb_000176_130 Hb_001989_050--Hb_000176_130 Hb_001492_040 Hb_001492_040 Hb_001989_050--Hb_001492_040 Hb_000086_690 Hb_000086_690 Hb_001989_050--Hb_000086_690 Hb_005214_150 Hb_005214_150 Hb_001989_050--Hb_005214_150 Hb_000836_020 Hb_000836_020 Hb_001989_050--Hb_000836_020 Hb_001959_270 Hb_001959_270 Hb_006573_170--Hb_001959_270 Hb_006573_170--Hb_001492_040 Hb_002784_010 Hb_002784_010 Hb_006573_170--Hb_002784_010 Hb_006573_170--Hb_005214_150 Hb_143489_010 Hb_143489_010 Hb_006573_170--Hb_143489_010 Hb_003124_160 Hb_003124_160 Hb_000176_130--Hb_003124_160 Hb_001235_230 Hb_001235_230 Hb_000176_130--Hb_001235_230 Hb_011202_020 Hb_011202_020 Hb_000176_130--Hb_011202_020 Hb_000261_030 Hb_000261_030 Hb_000176_130--Hb_000261_030 Hb_002044_170 Hb_002044_170 Hb_000176_130--Hb_002044_170 Hb_001401_060 Hb_001401_060 Hb_000176_130--Hb_001401_060 Hb_001492_040--Hb_001959_270 Hb_001723_140 Hb_001723_140 Hb_001492_040--Hb_001723_140 Hb_009476_090 Hb_009476_090 Hb_001492_040--Hb_009476_090 Hb_007283_030 Hb_007283_030 Hb_001492_040--Hb_007283_030 Hb_009486_170 Hb_009486_170 Hb_000086_690--Hb_009486_170 Hb_001133_030 Hb_001133_030 Hb_000086_690--Hb_001133_030 Hb_000183_050 Hb_000183_050 Hb_000086_690--Hb_000183_050 Hb_003119_080 Hb_003119_080 Hb_000086_690--Hb_003119_080 Hb_000086_690--Hb_001401_060 Hb_000086_690--Hb_011202_020 Hb_005214_150--Hb_002784_010 Hb_011671_230 Hb_011671_230 Hb_005214_150--Hb_011671_230 Hb_005214_150--Hb_001959_270 Hb_000327_080 Hb_000327_080 Hb_005214_150--Hb_000327_080 Hb_000703_130 Hb_000703_130 Hb_005214_150--Hb_000703_130 Hb_155159_010 Hb_155159_010 Hb_005214_150--Hb_155159_010 Hb_003581_170 Hb_003581_170 Hb_000836_020--Hb_003581_170 Hb_011242_060 Hb_011242_060 Hb_000836_020--Hb_011242_060 Hb_001699_280 Hb_001699_280 Hb_000836_020--Hb_001699_280 Hb_000265_090 Hb_000265_090 Hb_000836_020--Hb_000265_090 Hb_000836_020--Hb_000703_130 Hb_188063_010 Hb_188063_010 Hb_000836_020--Hb_188063_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.4062 85.4814 29.7033 46.3232 49.6769 62.5229
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.3172 5.91388 13.4881 57.076 58.0448

CAGE analysis