Hb_001959_270

Information

Type -
Description -
Location Contig1959: 256280-276793
Sequence    

Annotation

kegg
ID pop:POPTR_0010s07550g
description POPTRDRAFT_885217; chloroplast mutator family protein
nr
ID XP_012077620.1
description PREDICTED: DNA mismatch repair protein MSH1, mitochondrial isoform X1 [Jatropha curcas]
swissprot
ID Q84LK0
description DNA mismatch repair protein MSH1, mitochondrial OS=Arabidopsis thaliana GN=MSH1 PE=1 SV=1
trembl
ID A0A067KM31
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12884 PE=4 SV=1
Gene Ontology
ID GO:0005739
description dna mismatch repair protein mitochondrial isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19648: 256360-259602 , PASA_asmbl_19649: 259997-260439 , PASA_asmbl_19650: 263610-265725 , PASA_asmbl_19651: 266532-266643
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001959_270 0.0 - - PREDICTED: DNA mismatch repair protein MSH1, mitochondrial isoform X1 [Jatropha curcas]
2 Hb_006573_170 0.0585825229 - - conserved hypothetical protein [Ricinus communis]
3 Hb_179154_020 0.0590709484 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
4 Hb_001492_040 0.0628807393 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
5 Hb_007818_040 0.0686983491 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 50 isoform X2 [Jatropha curcas]
6 Hb_005214_150 0.071106571 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105636019 [Jatropha curcas]
7 Hb_000377_050 0.0728460594 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
8 Hb_009476_090 0.0735710115 - - PREDICTED: anaphase-promoting complex subunit 1 [Jatropha curcas]
9 Hb_002784_010 0.079913471 - - DNA-directed RNA polymerase I subunit, putative [Ricinus communis]
10 Hb_002571_030 0.081555942 - - PREDICTED: microfibrillar-associated protein 1-like [Prunus mume]
11 Hb_007283_030 0.0816922346 - - PREDICTED: pre-mRNA-processing protein 40C-like [Malus domestica]
12 Hb_013358_070 0.0860835717 - - protein with unknown function [Ricinus communis]
13 Hb_001723_140 0.0867783786 - - PREDICTED: importin beta-like SAD2 homolog isoform X2 [Jatropha curcas]
14 Hb_000027_050 0.0871318184 - - PREDICTED: uncharacterized protein LOC105636933 isoform X1 [Jatropha curcas]
15 Hb_155159_010 0.0884737905 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1 [Jatropha curcas]
16 Hb_007305_020 0.0930525458 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
17 Hb_003124_160 0.0933368434 - - dynamin, putative [Ricinus communis]
18 Hb_011920_020 0.0947899409 - - PREDICTED: uncharacterized protein LOC105645397 [Jatropha curcas]
19 Hb_001231_090 0.0953236546 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
20 Hb_002631_140 0.0964247651 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001959_270 Hb_001959_270 Hb_006573_170 Hb_006573_170 Hb_001959_270--Hb_006573_170 Hb_179154_020 Hb_179154_020 Hb_001959_270--Hb_179154_020 Hb_001492_040 Hb_001492_040 Hb_001959_270--Hb_001492_040 Hb_007818_040 Hb_007818_040 Hb_001959_270--Hb_007818_040 Hb_005214_150 Hb_005214_150 Hb_001959_270--Hb_005214_150 Hb_000377_050 Hb_000377_050 Hb_001959_270--Hb_000377_050 Hb_001989_050 Hb_001989_050 Hb_006573_170--Hb_001989_050 Hb_006573_170--Hb_001492_040 Hb_002784_010 Hb_002784_010 Hb_006573_170--Hb_002784_010 Hb_006573_170--Hb_005214_150 Hb_143489_010 Hb_143489_010 Hb_006573_170--Hb_143489_010 Hb_179154_020--Hb_007818_040 Hb_179154_020--Hb_000377_050 Hb_007305_020 Hb_007305_020 Hb_179154_020--Hb_007305_020 Hb_007576_230 Hb_007576_230 Hb_179154_020--Hb_007576_230 Hb_002571_030 Hb_002571_030 Hb_179154_020--Hb_002571_030 Hb_001723_140 Hb_001723_140 Hb_001492_040--Hb_001723_140 Hb_009476_090 Hb_009476_090 Hb_001492_040--Hb_009476_090 Hb_001492_040--Hb_001989_050 Hb_007283_030 Hb_007283_030 Hb_001492_040--Hb_007283_030 Hb_007818_040--Hb_002571_030 Hb_007818_040--Hb_007283_030 Hb_007818_040--Hb_007576_230 Hb_007818_040--Hb_000377_050 Hb_005214_150--Hb_002784_010 Hb_011671_230 Hb_011671_230 Hb_005214_150--Hb_011671_230 Hb_000327_080 Hb_000327_080 Hb_005214_150--Hb_000327_080 Hb_000703_130 Hb_000703_130 Hb_005214_150--Hb_000703_130 Hb_155159_010 Hb_155159_010 Hb_005214_150--Hb_155159_010 Hb_000377_050--Hb_009476_090 Hb_000377_050--Hb_007283_030 Hb_005832_010 Hb_005832_010 Hb_000377_050--Hb_005832_010 Hb_000377_050--Hb_000703_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.25997 8.48363 5.19163 3.11205 4.82962 6.40869
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.47667 1.46668 1.24547 5.16523 6.39982

CAGE analysis