Hb_007576_230

Information

Type -
Description -
Location Contig7576: 231114-240508
Sequence    

Annotation

kegg
ID rcu:RCOM_0196830
description Protein bem46, putative
nr
ID KDP24320.1
description hypothetical protein JCGZ_25616 [Jatropha curcas]
swissprot
ID Q96GS6
description Alpha/beta hydrolase domain-containing protein 17A OS=Homo sapiens GN=ABHD17A PE=1 SV=1
trembl
ID A0A067JWE7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25616 PE=4 SV=1
Gene Ontology
ID GO:0016787
description alpha beta hydrolase domain-containing protein 17b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57148: 230954-235312
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007576_230 0.0 - - hypothetical protein JCGZ_25616 [Jatropha curcas]
2 Hb_007818_040 0.0632947005 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 50 isoform X2 [Jatropha curcas]
3 Hb_007283_030 0.0678842525 - - PREDICTED: pre-mRNA-processing protein 40C-like [Malus domestica]
4 Hb_007576_220 0.068694426 - - PREDICTED: kanadaptin [Jatropha curcas]
5 Hb_000086_050 0.0773648026 - - PREDICTED: structural maintenance of chromosomes protein 1 [Jatropha curcas]
6 Hb_009449_090 0.0792283365 - - PREDICTED: RNA-binding protein 25 isoform X1 [Jatropha curcas]
7 Hb_000300_250 0.0841358817 - - polyribonucleotide nucleotidyltransferase, putative [Ricinus communis]
8 Hb_179154_020 0.084762413 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
9 Hb_000500_300 0.0848882579 - - PREDICTED: nucleolar protein 10 [Jatropha curcas]
10 Hb_001534_210 0.0850470859 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
11 Hb_155159_010 0.0856103981 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1 [Jatropha curcas]
12 Hb_002571_030 0.0879025205 - - PREDICTED: microfibrillar-associated protein 1-like [Prunus mume]
13 Hb_005539_040 0.0883095841 - - PREDICTED: RNA-binding protein 25 isoform X3 [Jatropha curcas]
14 Hb_004236_010 0.0897408662 - - PREDICTED: probable mitochondrial-processing peptidase subunit beta [Jatropha curcas]
15 Hb_001047_200 0.0909901913 - - PREDICTED: pre-mRNA-splicing factor 18 [Eucalyptus grandis]
16 Hb_002968_070 0.0922342104 - - PREDICTED: transcription initiation factor TFIID subunit 4b isoform X2 [Jatropha curcas]
17 Hb_000377_050 0.0922388718 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
18 Hb_010661_020 0.0934461423 - - PREDICTED: uncharacterized protein LOC105630767 isoform X1 [Jatropha curcas]
19 Hb_000645_130 0.0946475058 - - PREDICTED: bromodomain and WD repeat-containing protein 3 [Jatropha curcas]
20 Hb_003142_040 0.0963583836 - - Sf3a3 [Gossypium arboreum]

Gene co-expression network

sample Hb_007576_230 Hb_007576_230 Hb_007818_040 Hb_007818_040 Hb_007576_230--Hb_007818_040 Hb_007283_030 Hb_007283_030 Hb_007576_230--Hb_007283_030 Hb_007576_220 Hb_007576_220 Hb_007576_230--Hb_007576_220 Hb_000086_050 Hb_000086_050 Hb_007576_230--Hb_000086_050 Hb_009449_090 Hb_009449_090 Hb_007576_230--Hb_009449_090 Hb_000300_250 Hb_000300_250 Hb_007576_230--Hb_000300_250 Hb_002571_030 Hb_002571_030 Hb_007818_040--Hb_002571_030 Hb_007818_040--Hb_007283_030 Hb_001959_270 Hb_001959_270 Hb_007818_040--Hb_001959_270 Hb_179154_020 Hb_179154_020 Hb_007818_040--Hb_179154_020 Hb_000377_050 Hb_000377_050 Hb_007818_040--Hb_000377_050 Hb_155159_010 Hb_155159_010 Hb_007283_030--Hb_155159_010 Hb_011202_030 Hb_011202_030 Hb_007283_030--Hb_011202_030 Hb_007283_030--Hb_000086_050 Hb_007283_030--Hb_000377_050 Hb_007576_220--Hb_009449_090 Hb_007576_220--Hb_155159_010 Hb_005539_040 Hb_005539_040 Hb_007576_220--Hb_005539_040 Hb_007576_220--Hb_000086_050 Hb_002073_280 Hb_002073_280 Hb_007576_220--Hb_002073_280 Hb_000086_050--Hb_009449_090 Hb_002687_090 Hb_002687_090 Hb_000086_050--Hb_002687_090 Hb_000086_050--Hb_155159_010 Hb_009449_090--Hb_005539_040 Hb_009449_090--Hb_002571_030 Hb_000024_120 Hb_000024_120 Hb_009449_090--Hb_000024_120 Hb_009449_090--Hb_007283_030 Hb_000300_250--Hb_005539_040 Hb_000866_080 Hb_000866_080 Hb_000300_250--Hb_000866_080 Hb_000300_250--Hb_000086_050 Hb_001221_090 Hb_001221_090 Hb_000300_250--Hb_001221_090 Hb_000300_250--Hb_009449_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.9951 22.0714 15.8874 4.66533 11.4738 9.07018
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.25753 3.42552 4.38954 11.1974 12.1335

CAGE analysis