Hb_000300_250

Information

Type -
Description -
Location Contig300: 209597-227502
Sequence    

Annotation

kegg
ID rcu:RCOM_1321070
description polyribonucleotide nucleotidyltransferase, putative (EC:2.7.7.8)
nr
ID XP_002525684.1
description polyribonucleotide nucleotidyltransferase, putative [Ricinus communis]
swissprot
ID Q8GZQ3
description Polyribonucleotide nucleotidyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=PNP1 PE=1 SV=1
trembl
ID B9SI65
description Polyribonucleotide nucleotidyltransferase, putative OS=Ricinus communis GN=RCOM_1321070 PE=3 SV=1
Gene Ontology
ID GO:0009570
description probable polyribonucleotide nucleotidyltransferase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31568: 209699-212085 , PASA_asmbl_31569: 212281-216964 , PASA_asmbl_31570: 218220-218533 , PASA_asmbl_31571: 218403-219180 , PASA_asmbl_31572: 219951-223986 , PASA_asmbl_31573: 224140-227504
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_250 0.0 - - polyribonucleotide nucleotidyltransferase, putative [Ricinus communis]
2 Hb_005539_040 0.0623194933 - - PREDICTED: RNA-binding protein 25 isoform X3 [Jatropha curcas]
3 Hb_000866_080 0.0795754858 - - PREDICTED: signal peptide peptidase-like 4 isoform X1 [Jatropha curcas]
4 Hb_000086_050 0.0807538548 - - PREDICTED: structural maintenance of chromosomes protein 1 [Jatropha curcas]
5 Hb_007576_230 0.0841358817 - - hypothetical protein JCGZ_25616 [Jatropha curcas]
6 Hb_001221_090 0.0872458114 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
7 Hb_009449_090 0.0892955163 - - PREDICTED: RNA-binding protein 25 isoform X1 [Jatropha curcas]
8 Hb_007283_030 0.0902004714 - - PREDICTED: pre-mRNA-processing protein 40C-like [Malus domestica]
9 Hb_007576_220 0.0903080874 - - PREDICTED: kanadaptin [Jatropha curcas]
10 Hb_011202_030 0.0923487931 - - arsenite-resistance protein, putative [Ricinus communis]
11 Hb_001488_210 0.096112494 - - PREDICTED: protein RIK [Jatropha curcas]
12 Hb_003895_020 0.0967554788 - - PREDICTED: dedicator of cytokinesis protein 7 isoform X2 [Jatropha curcas]
13 Hb_007818_030 0.0984387935 - - PREDICTED: transcriptional corepressor SEUSS-like [Jatropha curcas]
14 Hb_002600_080 0.0986487489 - - nucleic acid binding protein, putative [Ricinus communis]
15 Hb_155159_010 0.0993961238 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1 [Jatropha curcas]
16 Hb_003992_180 0.1002458599 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
17 Hb_002968_070 0.1029377506 - - PREDICTED: transcription initiation factor TFIID subunit 4b isoform X2 [Jatropha curcas]
18 Hb_005765_040 0.1043950799 - - transcription elongation factor s-II, putative [Ricinus communis]
19 Hb_002553_010 0.1044661636 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 2-like [Populus euphratica]
20 Hb_003142_040 0.1050375602 - - Sf3a3 [Gossypium arboreum]

Gene co-expression network

sample Hb_000300_250 Hb_000300_250 Hb_005539_040 Hb_005539_040 Hb_000300_250--Hb_005539_040 Hb_000866_080 Hb_000866_080 Hb_000300_250--Hb_000866_080 Hb_000086_050 Hb_000086_050 Hb_000300_250--Hb_000086_050 Hb_007576_230 Hb_007576_230 Hb_000300_250--Hb_007576_230 Hb_001221_090 Hb_001221_090 Hb_000300_250--Hb_001221_090 Hb_009449_090 Hb_009449_090 Hb_000300_250--Hb_009449_090 Hb_005539_040--Hb_009449_090 Hb_010661_020 Hb_010661_020 Hb_005539_040--Hb_010661_020 Hb_007576_220 Hb_007576_220 Hb_005539_040--Hb_007576_220 Hb_011920_020 Hb_011920_020 Hb_005539_040--Hb_011920_020 Hb_005539_040--Hb_001221_090 Hb_003895_020 Hb_003895_020 Hb_000866_080--Hb_003895_020 Hb_011249_060 Hb_011249_060 Hb_000866_080--Hb_011249_060 Hb_015183_100 Hb_015183_100 Hb_000866_080--Hb_015183_100 Hb_000917_100 Hb_000917_100 Hb_000866_080--Hb_000917_100 Hb_004310_040 Hb_004310_040 Hb_000866_080--Hb_004310_040 Hb_000086_050--Hb_009449_090 Hb_007283_030 Hb_007283_030 Hb_000086_050--Hb_007283_030 Hb_000086_050--Hb_007576_220 Hb_002687_090 Hb_002687_090 Hb_000086_050--Hb_002687_090 Hb_000086_050--Hb_007576_230 Hb_155159_010 Hb_155159_010 Hb_000086_050--Hb_155159_010 Hb_007818_040 Hb_007818_040 Hb_007576_230--Hb_007818_040 Hb_007576_230--Hb_007283_030 Hb_007576_230--Hb_007576_220 Hb_007576_230--Hb_009449_090 Hb_003142_040 Hb_003142_040 Hb_001221_090--Hb_003142_040 Hb_002092_070 Hb_002092_070 Hb_001221_090--Hb_002092_070 Hb_004429_010 Hb_004429_010 Hb_001221_090--Hb_004429_010 Hb_011202_030 Hb_011202_030 Hb_001221_090--Hb_011202_030 Hb_001904_030 Hb_001904_030 Hb_001221_090--Hb_001904_030 Hb_002461_020 Hb_002461_020 Hb_001221_090--Hb_002461_020 Hb_009449_090--Hb_007576_220 Hb_002571_030 Hb_002571_030 Hb_009449_090--Hb_002571_030 Hb_000024_120 Hb_000024_120 Hb_009449_090--Hb_000024_120 Hb_009449_090--Hb_007283_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.27781 21.8395 14.1197 5.75705 9.76246 6.71951
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.45552 3.72427 1.81325 10.422 11.1888

CAGE analysis