Hb_003895_020

Information

Type -
Description -
Location Contig3895: 54768-62932
Sequence    

Annotation

kegg
ID rcu:RCOM_1244720
description spike-1, putative
nr
ID XP_012091238.1
description PREDICTED: dedicator of cytokinesis protein 7 isoform X2 [Jatropha curcas]
swissprot
ID Q8SAB7
description Guanine nucleotide exchange factor SPIKE 1 OS=Arabidopsis thaliana GN=SPK1 PE=1 SV=1
trembl
ID A0A067JD35
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21139 PE=4 SV=1
Gene Ontology
ID GO:0005085
description dedicator of cytokinesis protein 7 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39038: 54750-58076 , PASA_asmbl_39039: 58084-110394 , PASA_asmbl_39041: 60300-60547
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003895_020 0.0 - - PREDICTED: dedicator of cytokinesis protein 7 isoform X2 [Jatropha curcas]
2 Hb_000866_080 0.0736480515 - - PREDICTED: signal peptide peptidase-like 4 isoform X1 [Jatropha curcas]
3 Hb_004324_060 0.079982865 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
4 Hb_001221_090 0.0809857417 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
5 Hb_030545_030 0.0811578231 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
6 Hb_002903_140 0.082321199 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
7 Hb_155159_010 0.0829366116 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1 [Jatropha curcas]
8 Hb_044653_020 0.0832646122 transcription factor, desease resistance TF Family: GNAT, Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
9 Hb_006615_030 0.0848482914 - - prolyl oligopeptidase family protein [Populus trichocarpa]
10 Hb_096819_010 0.0852149107 - - PREDICTED: GRIP and coiled-coil domain-containing protein 2 isoform X4 [Jatropha curcas]
11 Hb_001911_010 0.0854422645 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
12 Hb_011202_030 0.0859063082 - - arsenite-resistance protein, putative [Ricinus communis]
13 Hb_159295_010 0.0882485186 - - hypothetical protein RCOM_1520720 [Ricinus communis]
14 Hb_003992_180 0.0892439097 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
15 Hb_000751_140 0.0903166048 - - PREDICTED: clathrin interactor EPSIN 2 [Jatropha curcas]
16 Hb_000334_130 0.0916593815 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
17 Hb_011249_060 0.0916777395 - - hypothetical protein POPTR_0018s12600g [Populus trichocarpa]
18 Hb_000358_200 0.0921148014 - - PREDICTED: uncharacterized protein LOC105637771 [Jatropha curcas]
19 Hb_000086_050 0.0925279167 - - PREDICTED: structural maintenance of chromosomes protein 1 [Jatropha curcas]
20 Hb_011920_020 0.0926779631 - - PREDICTED: uncharacterized protein LOC105645397 [Jatropha curcas]

Gene co-expression network

sample Hb_003895_020 Hb_003895_020 Hb_000866_080 Hb_000866_080 Hb_003895_020--Hb_000866_080 Hb_004324_060 Hb_004324_060 Hb_003895_020--Hb_004324_060 Hb_001221_090 Hb_001221_090 Hb_003895_020--Hb_001221_090 Hb_030545_030 Hb_030545_030 Hb_003895_020--Hb_030545_030 Hb_002903_140 Hb_002903_140 Hb_003895_020--Hb_002903_140 Hb_155159_010 Hb_155159_010 Hb_003895_020--Hb_155159_010 Hb_011249_060 Hb_011249_060 Hb_000866_080--Hb_011249_060 Hb_015183_100 Hb_015183_100 Hb_000866_080--Hb_015183_100 Hb_000300_250 Hb_000300_250 Hb_000866_080--Hb_000300_250 Hb_000917_100 Hb_000917_100 Hb_000866_080--Hb_000917_100 Hb_004310_040 Hb_004310_040 Hb_000866_080--Hb_004310_040 Hb_002774_150 Hb_002774_150 Hb_004324_060--Hb_002774_150 Hb_172421_010 Hb_172421_010 Hb_004324_060--Hb_172421_010 Hb_004324_060--Hb_000866_080 Hb_002942_110 Hb_002942_110 Hb_004324_060--Hb_002942_110 Hb_012038_010 Hb_012038_010 Hb_004324_060--Hb_012038_010 Hb_003142_040 Hb_003142_040 Hb_001221_090--Hb_003142_040 Hb_002092_070 Hb_002092_070 Hb_001221_090--Hb_002092_070 Hb_004429_010 Hb_004429_010 Hb_001221_090--Hb_004429_010 Hb_011202_030 Hb_011202_030 Hb_001221_090--Hb_011202_030 Hb_001904_030 Hb_001904_030 Hb_001221_090--Hb_001904_030 Hb_002461_020 Hb_002461_020 Hb_001221_090--Hb_002461_020 Hb_030545_030--Hb_002903_140 Hb_102438_030 Hb_102438_030 Hb_030545_030--Hb_102438_030 Hb_000227_310 Hb_000227_310 Hb_030545_030--Hb_000227_310 Hb_007017_070 Hb_007017_070 Hb_030545_030--Hb_007017_070 Hb_008165_030 Hb_008165_030 Hb_030545_030--Hb_008165_030 Hb_096819_010 Hb_096819_010 Hb_030545_030--Hb_096819_010 Hb_002903_140--Hb_008165_030 Hb_000977_300 Hb_000977_300 Hb_002903_140--Hb_000977_300 Hb_004319_050 Hb_004319_050 Hb_002903_140--Hb_004319_050 Hb_002903_140--Hb_007017_070 Hb_002903_140--Hb_096819_010 Hb_002282_060 Hb_002282_060 Hb_155159_010--Hb_002282_060 Hb_011920_020 Hb_011920_020 Hb_155159_010--Hb_011920_020 Hb_007283_030 Hb_007283_030 Hb_155159_010--Hb_007283_030 Hb_000703_130 Hb_000703_130 Hb_155159_010--Hb_000703_130 Hb_001231_090 Hb_001231_090 Hb_155159_010--Hb_001231_090 Hb_010661_020 Hb_010661_020 Hb_155159_010--Hb_010661_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.1606 65.343 36.3363 25.5737 23.4051 22.5124
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.75348 6.85672 8.74812 21.2515 26.739

CAGE analysis