Hb_012038_010

Information

Type -
Description -
Location Contig12038: 38653-46312
Sequence    

Annotation

kegg
ID rcu:RCOM_0943250
description phospholipid-transporting atpase, putative (EC:3.6.3.1)
nr
ID XP_002514445.1
description phospholipid-transporting atpase, putative [Ricinus communis]
swissprot
ID P98204
description Phospholipid-transporting ATPase 1 OS=Arabidopsis thaliana GN=ALA1 PE=2 SV=1
trembl
ID B9RL26
description Phospholipid-transporting ATPase OS=Ricinus communis GN=RCOM_0943250 PE=3 SV=1
Gene Ontology
ID GO:0005622
description phospholipid-transporting atpase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06307: 39170-39946 , PASA_asmbl_06308: 38568-44004 , PASA_asmbl_06310: 46049-46297
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012038_010 0.0 - - phospholipid-transporting atpase, putative [Ricinus communis]
2 Hb_044653_020 0.0962362798 transcription factor, desease resistance TF Family: GNAT, Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
3 Hb_009674_080 0.1013109617 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
4 Hb_004324_060 0.1013780281 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
5 Hb_003895_020 0.1021667731 - - PREDICTED: dedicator of cytokinesis protein 7 isoform X2 [Jatropha curcas]
6 Hb_002942_110 0.1023323276 transcription factor TF Family: ARF PREDICTED: auxin response factor 2-like [Jatropha curcas]
7 Hb_000526_060 0.1037765403 - - PREDICTED: clustered mitochondria protein [Jatropha curcas]
8 Hb_003018_040 0.104303545 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
9 Hb_000751_140 0.1050736218 - - PREDICTED: clathrin interactor EPSIN 2 [Jatropha curcas]
10 Hb_004800_240 0.1065394632 - - PREDICTED: vam6/Vps39-like protein [Jatropha curcas]
11 Hb_003120_070 0.1066622179 - - ATP binding protein, putative [Ricinus communis]
12 Hb_009193_110 0.110793803 - - PREDICTED: wall-associated receptor kinase-like 1 isoform X1 [Jatropha curcas]
13 Hb_000218_020 0.1111838224 - - synaptosomal associated protein, putative [Ricinus communis]
14 Hb_002387_070 0.1113987241 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial [Jatropha curcas]
15 Hb_000896_060 0.1123810776 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_012082_010 0.112832228 - - PREDICTED: transcription factor GTE4 isoform X1 [Jatropha curcas]
17 Hb_002073_280 0.113098307 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
18 Hb_000334_130 0.1140279217 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
19 Hb_013749_020 0.1161762684 - - PREDICTED: inositol phosphorylceramide glucuronosyltransferase 1 [Jatropha curcas]
20 Hb_000123_350 0.1174558939 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_012038_010 Hb_012038_010 Hb_044653_020 Hb_044653_020 Hb_012038_010--Hb_044653_020 Hb_009674_080 Hb_009674_080 Hb_012038_010--Hb_009674_080 Hb_004324_060 Hb_004324_060 Hb_012038_010--Hb_004324_060 Hb_003895_020 Hb_003895_020 Hb_012038_010--Hb_003895_020 Hb_002942_110 Hb_002942_110 Hb_012038_010--Hb_002942_110 Hb_000526_060 Hb_000526_060 Hb_012038_010--Hb_000526_060 Hb_012368_100 Hb_012368_100 Hb_044653_020--Hb_012368_100 Hb_000896_060 Hb_000896_060 Hb_044653_020--Hb_000896_060 Hb_004785_030 Hb_004785_030 Hb_044653_020--Hb_004785_030 Hb_000117_070 Hb_000117_070 Hb_044653_020--Hb_000117_070 Hb_005188_040 Hb_005188_040 Hb_044653_020--Hb_005188_040 Hb_002387_070 Hb_002387_070 Hb_044653_020--Hb_002387_070 Hb_009674_080--Hb_000526_060 Hb_003120_070 Hb_003120_070 Hb_009674_080--Hb_003120_070 Hb_009674_080--Hb_000117_070 Hb_120470_010 Hb_120470_010 Hb_009674_080--Hb_120470_010 Hb_012753_040 Hb_012753_040 Hb_009674_080--Hb_012753_040 Hb_004324_060--Hb_003895_020 Hb_002774_150 Hb_002774_150 Hb_004324_060--Hb_002774_150 Hb_172421_010 Hb_172421_010 Hb_004324_060--Hb_172421_010 Hb_000866_080 Hb_000866_080 Hb_004324_060--Hb_000866_080 Hb_004324_060--Hb_002942_110 Hb_003895_020--Hb_000866_080 Hb_001221_090 Hb_001221_090 Hb_003895_020--Hb_001221_090 Hb_030545_030 Hb_030545_030 Hb_003895_020--Hb_030545_030 Hb_002903_140 Hb_002903_140 Hb_003895_020--Hb_002903_140 Hb_155159_010 Hb_155159_010 Hb_003895_020--Hb_155159_010 Hb_004195_120 Hb_004195_120 Hb_002942_110--Hb_004195_120 Hb_020178_050 Hb_020178_050 Hb_002942_110--Hb_020178_050 Hb_128695_030 Hb_128695_030 Hb_002942_110--Hb_128695_030 Hb_001369_770 Hb_001369_770 Hb_002942_110--Hb_001369_770 Hb_002942_110--Hb_003895_020 Hb_000526_060--Hb_000896_060 Hb_000526_060--Hb_000117_070 Hb_007818_030 Hb_007818_030 Hb_000526_060--Hb_007818_030 Hb_000526_060--Hb_120470_010 Hb_000526_060--Hb_155159_010 Hb_000703_130 Hb_000703_130 Hb_000526_060--Hb_000703_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.61346 25.349 8.61447 8.26083 10.9746 5.85513
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.65665 2.79049 2.22854 6.18486 6.44617

CAGE analysis