Hb_002774_150

Information

Type -
Description -
Location Contig2774: 120989-121954
Sequence    

Annotation

kegg
ID pop:POPTR_0002s09520g
description hypothetical protein
nr
ID XP_012067843.1
description PREDICTED: F-box protein At1g22220 [Jatropha curcas]
swissprot
ID Q9LM18
description F-box protein At1g22220 OS=Arabidopsis thaliana GN=At1g22220 PE=2 SV=1
trembl
ID A0A067KYY1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15769 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28972: 121223-121553 , PASA_asmbl_28973: 121643-122065 , PASA_asmbl_28974: 122099-122228
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002774_150 0.0 - - PREDICTED: F-box protein At1g22220 [Jatropha curcas]
2 Hb_004324_060 0.0844498204 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
3 Hb_002485_040 0.108388361 - - PREDICTED: uncharacterized protein LOC105637426 [Jatropha curcas]
4 Hb_012038_010 0.1202135001 - - phospholipid-transporting atpase, putative [Ricinus communis]
5 Hb_172421_010 0.1216656871 - - cysteine protease [Hevea brasiliensis]
6 Hb_004994_300 0.1228905963 - - synaptotagmin, putative [Ricinus communis]
7 Hb_012753_040 0.1230255175 - - PREDICTED: F-box protein PP2-A12 isoform X1 [Jatropha curcas]
8 Hb_005568_130 0.126463766 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
9 Hb_004032_310 0.1296921366 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 14 [Jatropha curcas]
10 Hb_009674_080 0.1309049645 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
11 Hb_001662_170 0.1332441986 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
12 Hb_003895_020 0.1339935546 - - PREDICTED: dedicator of cytokinesis protein 7 isoform X2 [Jatropha curcas]
13 Hb_000751_140 0.1350121406 - - PREDICTED: clathrin interactor EPSIN 2 [Jatropha curcas]
14 Hb_002942_110 0.1353224776 transcription factor TF Family: ARF PREDICTED: auxin response factor 2-like [Jatropha curcas]
15 Hb_000991_050 0.1354850383 - - PREDICTED: uncharacterized protein LOC105636325 [Jatropha curcas]
16 Hb_012082_010 0.1410022158 - - PREDICTED: transcription factor GTE4 isoform X1 [Jatropha curcas]
17 Hb_000123_350 0.1430437504 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
18 Hb_002793_060 0.1440785143 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980 [Populus euphratica]
19 Hb_020178_050 0.1441257362 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At4g33300 [Jatropha curcas]
20 Hb_044653_020 0.1446591996 transcription factor, desease resistance TF Family: GNAT, Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]

Gene co-expression network

sample Hb_002774_150 Hb_002774_150 Hb_004324_060 Hb_004324_060 Hb_002774_150--Hb_004324_060 Hb_002485_040 Hb_002485_040 Hb_002774_150--Hb_002485_040 Hb_012038_010 Hb_012038_010 Hb_002774_150--Hb_012038_010 Hb_172421_010 Hb_172421_010 Hb_002774_150--Hb_172421_010 Hb_004994_300 Hb_004994_300 Hb_002774_150--Hb_004994_300 Hb_012753_040 Hb_012753_040 Hb_002774_150--Hb_012753_040 Hb_003895_020 Hb_003895_020 Hb_004324_060--Hb_003895_020 Hb_004324_060--Hb_172421_010 Hb_000866_080 Hb_000866_080 Hb_004324_060--Hb_000866_080 Hb_002942_110 Hb_002942_110 Hb_004324_060--Hb_002942_110 Hb_004324_060--Hb_012038_010 Hb_000123_350 Hb_000123_350 Hb_002485_040--Hb_000123_350 Hb_012082_010 Hb_012082_010 Hb_002485_040--Hb_012082_010 Hb_001865_060 Hb_001865_060 Hb_002485_040--Hb_001865_060 Hb_125126_010 Hb_125126_010 Hb_002485_040--Hb_125126_010 Hb_000896_060 Hb_000896_060 Hb_002485_040--Hb_000896_060 Hb_044653_020 Hb_044653_020 Hb_012038_010--Hb_044653_020 Hb_009674_080 Hb_009674_080 Hb_012038_010--Hb_009674_080 Hb_012038_010--Hb_003895_020 Hb_012038_010--Hb_002942_110 Hb_000526_060 Hb_000526_060 Hb_012038_010--Hb_000526_060 Hb_002248_120 Hb_002248_120 Hb_172421_010--Hb_002248_120 Hb_001951_240 Hb_001951_240 Hb_172421_010--Hb_001951_240 Hb_172421_010--Hb_004994_300 Hb_007313_070 Hb_007313_070 Hb_172421_010--Hb_007313_070 Hb_013405_180 Hb_013405_180 Hb_172421_010--Hb_013405_180 Hb_003605_220 Hb_003605_220 Hb_004994_300--Hb_003605_220 Hb_004994_300--Hb_007313_070 Hb_000270_230 Hb_000270_230 Hb_004994_300--Hb_000270_230 Hb_004032_310 Hb_004032_310 Hb_004994_300--Hb_004032_310 Hb_003752_120 Hb_003752_120 Hb_004994_300--Hb_003752_120 Hb_000015_160 Hb_000015_160 Hb_012753_040--Hb_000015_160 Hb_012753_040--Hb_009674_080 Hb_000991_050 Hb_000991_050 Hb_012753_040--Hb_000991_050 Hb_000922_220 Hb_000922_220 Hb_012753_040--Hb_000922_220 Hb_003120_070 Hb_003120_070 Hb_012753_040--Hb_003120_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.73598 30.5439 8.15265 7.73704 7.61757 5.96893
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.42876 0.790734 1.75775 4.47246 9.42644

CAGE analysis