Hb_000922_220

Information

Type -
Description -
Location Contig922: 208361-211642
Sequence    

Annotation

kegg
ID rcu:RCOM_1510520
description hypothetical protein
nr
ID XP_012080058.1
description PREDICTED: serine/threonine-protein kinase ATM-like [Jatropha curcas]
swissprot
ID Q9M3G7
description Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana GN=ATM PE=2 SV=1
trembl
ID A0A067KGY1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11470 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62490: 208001-212074 , PASA_asmbl_62491: 212110-212221
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000922_220 0.0 - - PREDICTED: serine/threonine-protein kinase ATM-like [Jatropha curcas]
2 Hb_004875_010 0.1026958624 - - plasma membrane aquaporin 1 [Hevea brasiliensis]
3 Hb_122273_020 0.1166352788 transcription factor TF Family: RWP-RK PREDICTED: protein NLP2 [Jatropha curcas]
4 Hb_002804_030 0.1180608924 - - PREDICTED: probable protein phosphatase 2C 4 [Jatropha curcas]
5 Hb_000434_010 0.1181789552 - - PREDICTED: protein starmaker [Jatropha curcas]
6 Hb_002918_320 0.1230756478 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X1 [Jatropha curcas]
7 Hb_172421_010 0.1252879267 - - cysteine protease [Hevea brasiliensis]
8 Hb_012753_040 0.1270965882 - - PREDICTED: F-box protein PP2-A12 isoform X1 [Jatropha curcas]
9 Hb_001269_050 0.1271032678 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
10 Hb_013405_180 0.1294907165 - - PREDICTED: uncharacterized protein LOC105648441 [Jatropha curcas]
11 Hb_003120_070 0.1302664921 - - ATP binding protein, putative [Ricinus communis]
12 Hb_011616_040 0.1320551381 - - glucan water dikinase 3, partial [Manihot esculenta]
13 Hb_014720_030 0.1335666984 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0012s08280g [Populus trichocarpa]
14 Hb_009674_080 0.1339031464 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
15 Hb_004324_060 0.1339500361 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
16 Hb_000320_360 0.1399076613 - - PREDICTED: starch synthase 3, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
17 Hb_000413_250 0.1415119495 - - Cysteine-rich RLK 29 [Theobroma cacao]
18 Hb_001408_020 0.1448242867 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Jatropha curcas]
19 Hb_001054_120 0.1450265783 - - PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Jatropha curcas]
20 Hb_008686_020 0.1464110866 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000922_220 Hb_000922_220 Hb_004875_010 Hb_004875_010 Hb_000922_220--Hb_004875_010 Hb_122273_020 Hb_122273_020 Hb_000922_220--Hb_122273_020 Hb_002804_030 Hb_002804_030 Hb_000922_220--Hb_002804_030 Hb_000434_010 Hb_000434_010 Hb_000922_220--Hb_000434_010 Hb_002918_320 Hb_002918_320 Hb_000922_220--Hb_002918_320 Hb_172421_010 Hb_172421_010 Hb_000922_220--Hb_172421_010 Hb_014720_030 Hb_014720_030 Hb_004875_010--Hb_014720_030 Hb_004875_010--Hb_122273_020 Hb_000649_270 Hb_000649_270 Hb_004875_010--Hb_000649_270 Hb_002005_030 Hb_002005_030 Hb_004875_010--Hb_002005_030 Hb_005772_030 Hb_005772_030 Hb_004875_010--Hb_005772_030 Hb_001054_120 Hb_001054_120 Hb_122273_020--Hb_001054_120 Hb_122273_020--Hb_014720_030 Hb_000243_400 Hb_000243_400 Hb_122273_020--Hb_000243_400 Hb_122273_020--Hb_002918_320 Hb_000413_250 Hb_000413_250 Hb_122273_020--Hb_000413_250 Hb_002804_030--Hb_000434_010 Hb_001073_030 Hb_001073_030 Hb_002804_030--Hb_001073_030 Hb_010921_020 Hb_010921_020 Hb_002804_030--Hb_010921_020 Hb_002804_030--Hb_004875_010 Hb_000631_140 Hb_000631_140 Hb_002804_030--Hb_000631_140 Hb_000434_010--Hb_004875_010 Hb_005181_040 Hb_005181_040 Hb_000434_010--Hb_005181_040 Hb_009674_080 Hb_009674_080 Hb_000434_010--Hb_009674_080 Hb_003216_060 Hb_003216_060 Hb_000434_010--Hb_003216_060 Hb_008686_020 Hb_008686_020 Hb_002918_320--Hb_008686_020 Hb_002918_320--Hb_000413_250 Hb_005765_040 Hb_005765_040 Hb_002918_320--Hb_005765_040 Hb_004696_070 Hb_004696_070 Hb_002918_320--Hb_004696_070 Hb_001951_100 Hb_001951_100 Hb_002918_320--Hb_001951_100 Hb_001561_010 Hb_001561_010 Hb_002918_320--Hb_001561_010 Hb_004324_060 Hb_004324_060 Hb_172421_010--Hb_004324_060 Hb_002248_120 Hb_002248_120 Hb_172421_010--Hb_002248_120 Hb_001951_240 Hb_001951_240 Hb_172421_010--Hb_001951_240 Hb_004994_300 Hb_004994_300 Hb_172421_010--Hb_004994_300 Hb_007313_070 Hb_007313_070 Hb_172421_010--Hb_007313_070 Hb_013405_180 Hb_013405_180 Hb_172421_010--Hb_013405_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.01564 36.3111 13.6374 15.9807 14.1782 9.92644
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.12353 1.82678 1.76963 11.9903 27.6366

CAGE analysis