Hb_000631_140

Information

Type -
Description -
Location Contig631: 178803-183479
Sequence    

Annotation

kegg
ID rcu:RCOM_1469930
description chaperone clpb, putative
nr
ID XP_012080363.1
description PREDICTED: chaperone protein ClpB1 [Jatropha curcas]
swissprot
ID P42730
description Chaperone protein ClpB1 OS=Arabidopsis thaliana GN=CLPB1 PE=1 SV=2
trembl
ID A0A067K8K0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11709 PE=3 SV=1
Gene Ontology
ID GO:0005524
description chaperone protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51838: 178806-183332
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000631_140 0.0 - - PREDICTED: chaperone protein ClpB1 [Jatropha curcas]
2 Hb_000015_160 0.1514714549 - - Heat shock cognate 70 kDa protein 1 [Triticum urartu]
3 Hb_012753_040 0.1572272211 - - PREDICTED: F-box protein PP2-A12 isoform X1 [Jatropha curcas]
4 Hb_002804_030 0.1644338895 - - PREDICTED: probable protein phosphatase 2C 4 [Jatropha curcas]
5 Hb_010921_020 0.1650965539 - - PREDICTED: cyclin-SDS [Jatropha curcas]
6 Hb_000991_050 0.1724441954 - - PREDICTED: uncharacterized protein LOC105636325 [Jatropha curcas]
7 Hb_000302_300 0.1737196068 - - PREDICTED: heat shock protein 83 [Populus euphratica]
8 Hb_021254_010 0.1822938225 transcription factor TF Family: HSF hypothetical protein JCGZ_07655 [Jatropha curcas]
9 Hb_000922_220 0.1883553655 - - PREDICTED: serine/threonine-protein kinase ATM-like [Jatropha curcas]
10 Hb_006573_010 0.1959266603 - - heat shock protein [Hevea brasiliensis]
11 Hb_000434_010 0.1962008358 - - PREDICTED: protein starmaker [Jatropha curcas]
12 Hb_009674_080 0.1987158662 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
13 Hb_162280_010 0.2084285578 - - Phosphoprotein phosphatase isoform 2, partial [Theobroma cacao]
14 Hb_004631_130 0.219907581 - - helicase domain-containing family protein [Populus trichocarpa]
15 Hb_036568_010 0.223416672 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 23 [Jatropha curcas]
16 Hb_001073_030 0.227033165 - - PREDICTED: APO protein 3, mitochondrial [Jatropha curcas]
17 Hb_005307_040 0.227589239 - - gulonolactone oxidase, putative [Ricinus communis]
18 Hb_002774_150 0.2299157681 - - PREDICTED: F-box protein At1g22220 [Jatropha curcas]
19 Hb_078106_010 0.2300456695 - - seed maturation protein PM37 [Populus trichocarpa]
20 Hb_006629_020 0.2326119574 - - ferric reductase oxidase [Manihot esculenta]

Gene co-expression network

sample Hb_000631_140 Hb_000631_140 Hb_000015_160 Hb_000015_160 Hb_000631_140--Hb_000015_160 Hb_012753_040 Hb_012753_040 Hb_000631_140--Hb_012753_040 Hb_002804_030 Hb_002804_030 Hb_000631_140--Hb_002804_030 Hb_010921_020 Hb_010921_020 Hb_000631_140--Hb_010921_020 Hb_000991_050 Hb_000991_050 Hb_000631_140--Hb_000991_050 Hb_000302_300 Hb_000302_300 Hb_000631_140--Hb_000302_300 Hb_000015_160--Hb_000991_050 Hb_000015_160--Hb_012753_040 Hb_002387_070 Hb_002387_070 Hb_000015_160--Hb_002387_070 Hb_002774_150 Hb_002774_150 Hb_000015_160--Hb_002774_150 Hb_009674_080 Hb_009674_080 Hb_000015_160--Hb_009674_080 Hb_012753_040--Hb_009674_080 Hb_012753_040--Hb_000991_050 Hb_012753_040--Hb_002774_150 Hb_000922_220 Hb_000922_220 Hb_012753_040--Hb_000922_220 Hb_003120_070 Hb_003120_070 Hb_012753_040--Hb_003120_070 Hb_002804_030--Hb_000922_220 Hb_000434_010 Hb_000434_010 Hb_002804_030--Hb_000434_010 Hb_001073_030 Hb_001073_030 Hb_002804_030--Hb_001073_030 Hb_002804_030--Hb_010921_020 Hb_004875_010 Hb_004875_010 Hb_002804_030--Hb_004875_010 Hb_010921_020--Hb_000922_220 Hb_000175_270 Hb_000175_270 Hb_010921_020--Hb_000175_270 Hb_010921_020--Hb_001073_030 Hb_000032_020 Hb_000032_020 Hb_010921_020--Hb_000032_020 Hb_005183_140 Hb_005183_140 Hb_010921_020--Hb_005183_140 Hb_000320_360 Hb_000320_360 Hb_010921_020--Hb_000320_360 Hb_000991_050--Hb_002774_150 Hb_000991_050--Hb_009674_080 Hb_004324_060 Hb_004324_060 Hb_000991_050--Hb_004324_060 Hb_000139_180 Hb_000139_180 Hb_000991_050--Hb_000139_180 Hb_002843_220 Hb_002843_220 Hb_000302_300--Hb_002843_220 Hb_021254_010 Hb_021254_010 Hb_000302_300--Hb_021254_010 Hb_006573_010 Hb_006573_010 Hb_000302_300--Hb_006573_010 Hb_020247_050 Hb_020247_050 Hb_000302_300--Hb_020247_050 Hb_000302_300--Hb_000991_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.2349 373.898 44.3869 89.4383 184.63 28.3755
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.51574 7.48629 22.2643 91.4804 230.275

CAGE analysis