Hb_002843_220

Information

Type -
Description -
Location Contig2843: 222183-223041
Sequence    

Annotation

kegg
ID rcu:RCOM_0444640
description heat shock protein, putative
nr
ID XP_012071995.1
description PREDICTED: small heat shock protein, chloroplastic [Jatropha curcas]
swissprot
ID P30222
description Small heat shock protein, chloroplastic OS=Petunia hybrida GN=HSP22 PE=2 SV=1
trembl
ID A0A067LI46
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05100 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29772: 222143-223174
cDNA
(Sanger)
(ID:Location)		 025_P06.ab1: 222143-223040

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002843_220 0.0 - - PREDICTED: small heat shock protein, chloroplastic [Jatropha curcas]
2 Hb_000302_300 0.1581626795 - - PREDICTED: heat shock protein 83 [Populus euphratica]
3 Hb_020094_020 0.1844067857 - - PREDICTED: 17.1 kDa class II heat shock protein-like [Pyrus x bretschneideri]
4 Hb_020247_050 0.1848005773 - - PREDICTED: 18.1 kDa class I heat shock protein-like [Populus euphratica]
5 Hb_000796_050 0.2160584903 - - galactinol synthase [Manihot esculenta]
6 Hb_006721_070 0.2200607767 - - PREDICTED: 70 kDa peptidyl-prolyl isomerase-like [Jatropha curcas]
7 Hb_006573_010 0.2285314162 - - heat shock protein [Hevea brasiliensis]
8 Hb_000488_010 0.2359919453 - - 18.1 kDa class I heat shock protein [Jatropha curcas]
9 Hb_001235_100 0.2401773515 - - heat-shock protein, putative [Ricinus communis]
10 Hb_000488_030 0.2403575949 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Jatropha curcas]
11 Hb_000488_020 0.2463104996 - - PREDICTED: UDP-glucose iridoid glucosyltransferase-like [Jatropha curcas]
12 Hb_000991_050 0.2485847217 - - PREDICTED: uncharacterized protein LOC105636325 [Jatropha curcas]
13 Hb_021254_010 0.2572882024 transcription factor TF Family: HSF hypothetical protein JCGZ_07655 [Jatropha curcas]
14 Hb_000631_140 0.2611340491 - - PREDICTED: chaperone protein ClpB1 [Jatropha curcas]
15 Hb_004296_010 0.2649325904 - - PREDICTED: activator of 90 kDa heat shock protein ATPase homolog 1 [Jatropha curcas]
16 Hb_012753_040 0.266101416 - - PREDICTED: F-box protein PP2-A12 isoform X1 [Jatropha curcas]
17 Hb_079297_010 0.26644388 - - hypothetical protein VITISV_012409 [Vitis vinifera]
18 Hb_000140_370 0.2678522723 - - PREDICTED: BAG family molecular chaperone regulator 6 [Jatropha curcas]
19 Hb_000015_160 0.2698689927 - - Heat shock cognate 70 kDa protein 1 [Triticum urartu]
20 Hb_007257_010 0.2700809296 - - cytosolic class II low molecular weight heat shock protein [Prunus dulcis]

Gene co-expression network

sample Hb_002843_220 Hb_002843_220 Hb_000302_300 Hb_000302_300 Hb_002843_220--Hb_000302_300 Hb_020094_020 Hb_020094_020 Hb_002843_220--Hb_020094_020 Hb_020247_050 Hb_020247_050 Hb_002843_220--Hb_020247_050 Hb_000796_050 Hb_000796_050 Hb_002843_220--Hb_000796_050 Hb_006721_070 Hb_006721_070 Hb_002843_220--Hb_006721_070 Hb_006573_010 Hb_006573_010 Hb_002843_220--Hb_006573_010 Hb_021254_010 Hb_021254_010 Hb_000302_300--Hb_021254_010 Hb_000302_300--Hb_006573_010 Hb_000302_300--Hb_020247_050 Hb_000631_140 Hb_000631_140 Hb_000302_300--Hb_000631_140 Hb_000991_050 Hb_000991_050 Hb_000302_300--Hb_000991_050 Hb_001235_100 Hb_001235_100 Hb_020094_020--Hb_001235_100 Hb_010020_010 Hb_010020_010 Hb_020094_020--Hb_010020_010 Hb_000062_110 Hb_000062_110 Hb_020094_020--Hb_000062_110 Hb_004296_010 Hb_004296_010 Hb_020094_020--Hb_004296_010 Hb_020094_020--Hb_000302_300 Hb_007257_010 Hb_007257_010 Hb_020247_050--Hb_007257_010 Hb_020247_050--Hb_006573_010 Hb_020247_050--Hb_000796_050 Hb_012753_040 Hb_012753_040 Hb_020247_050--Hb_012753_040 Hb_000796_050--Hb_000302_300 Hb_000796_050--Hb_006573_010 Hb_022880_020 Hb_022880_020 Hb_000796_050--Hb_022880_020 Hb_000796_050--Hb_000991_050 Hb_006721_070--Hb_000991_050 Hb_006721_070--Hb_021254_010 Hb_006721_070--Hb_000302_300 Hb_006721_070--Hb_006573_010 Hb_000997_150 Hb_000997_150 Hb_006721_070--Hb_000997_150 Hb_006721_070--Hb_004296_010 Hb_006573_010--Hb_012753_040 Hb_006573_010--Hb_007257_010 Hb_001766_040 Hb_001766_040 Hb_006573_010--Hb_001766_040 Hb_006573_010--Hb_000991_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.1169 814.85 71.8542 51.943 655.848 104.936
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.9463 24.5735 20.8676 13.8829 275.315

CAGE analysis