Hb_000796_050

Information

Type -
Description -
Location Contig796: 25548-27100
Sequence    

Annotation

kegg
ID rcu:RCOM_1345560
description hypothetical protein
nr
ID AGC51778.1
description galactinol synthase [Manihot esculenta]
swissprot
ID O22893
description Galactinol synthase 1 OS=Arabidopsis thaliana GN=GOLS1 PE=1 SV=1
trembl
ID V9M5C7
description Hexosyltransferase OS=Manihot esculenta GN=GolS3 PE=2 SV=1
Gene Ontology
ID GO:0047216
description galactinol synthase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58546: 25558-27205
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000796_050 0.0 - - galactinol synthase [Manihot esculenta]
2 Hb_000302_300 0.1891546723 - - PREDICTED: heat shock protein 83 [Populus euphratica]
3 Hb_020247_050 0.19171452 - - PREDICTED: 18.1 kDa class I heat shock protein-like [Populus euphratica]
4 Hb_002843_220 0.2160584903 - - PREDICTED: small heat shock protein, chloroplastic [Jatropha curcas]
5 Hb_006573_010 0.2220845231 - - heat shock protein [Hevea brasiliensis]
6 Hb_022880_020 0.2229954971 - - PREDICTED: uncharacterized protein LOC105631661 [Jatropha curcas]
7 Hb_000991_050 0.2397856661 - - PREDICTED: uncharacterized protein LOC105636325 [Jatropha curcas]
8 Hb_012753_040 0.2466559201 - - PREDICTED: F-box protein PP2-A12 isoform X1 [Jatropha curcas]
9 Hb_007257_010 0.2508025828 - - cytosolic class II low molecular weight heat shock protein [Prunus dulcis]
10 Hb_021254_010 0.2599542741 transcription factor TF Family: HSF hypothetical protein JCGZ_07655 [Jatropha curcas]
11 Hb_004074_030 0.2613308012 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_011164_010 0.2620365084 - - cytosolic class II low molecular weight heat shock protein [Prunus dulcis]
13 Hb_000631_140 0.2665295362 - - PREDICTED: chaperone protein ClpB1 [Jatropha curcas]
14 Hb_000015_160 0.2683298557 - - Heat shock cognate 70 kDa protein 1 [Triticum urartu]
15 Hb_005736_050 0.2692271865 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Jatropha curcas]
16 Hb_002804_030 0.2740743834 - - PREDICTED: probable protein phosphatase 2C 4 [Jatropha curcas]
17 Hb_001514_060 0.2753334615 transcription factor TF Family: MYB hypothetical protein JCGZ_16088 [Jatropha curcas]
18 Hb_006721_070 0.2760819911 - - PREDICTED: 70 kDa peptidyl-prolyl isomerase-like [Jatropha curcas]
19 Hb_002774_150 0.2773712698 - - PREDICTED: F-box protein At1g22220 [Jatropha curcas]
20 Hb_000483_230 0.2780215172 - - PREDICTED: cationic amino acid transporter 6, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_000796_050 Hb_000796_050 Hb_000302_300 Hb_000302_300 Hb_000796_050--Hb_000302_300 Hb_020247_050 Hb_020247_050 Hb_000796_050--Hb_020247_050 Hb_002843_220 Hb_002843_220 Hb_000796_050--Hb_002843_220 Hb_006573_010 Hb_006573_010 Hb_000796_050--Hb_006573_010 Hb_022880_020 Hb_022880_020 Hb_000796_050--Hb_022880_020 Hb_000991_050 Hb_000991_050 Hb_000796_050--Hb_000991_050 Hb_000302_300--Hb_002843_220 Hb_021254_010 Hb_021254_010 Hb_000302_300--Hb_021254_010 Hb_000302_300--Hb_006573_010 Hb_000302_300--Hb_020247_050 Hb_000631_140 Hb_000631_140 Hb_000302_300--Hb_000631_140 Hb_000302_300--Hb_000991_050 Hb_007257_010 Hb_007257_010 Hb_020247_050--Hb_007257_010 Hb_020247_050--Hb_006573_010 Hb_020247_050--Hb_002843_220 Hb_012753_040 Hb_012753_040 Hb_020247_050--Hb_012753_040 Hb_020094_020 Hb_020094_020 Hb_002843_220--Hb_020094_020 Hb_006721_070 Hb_006721_070 Hb_002843_220--Hb_006721_070 Hb_002843_220--Hb_006573_010 Hb_006573_010--Hb_012753_040 Hb_006573_010--Hb_007257_010 Hb_001766_040 Hb_001766_040 Hb_006573_010--Hb_001766_040 Hb_006573_010--Hb_000991_050 Hb_003060_050 Hb_003060_050 Hb_022880_020--Hb_003060_050 Hb_000123_030 Hb_000123_030 Hb_022880_020--Hb_000123_030 Hb_004074_030 Hb_004074_030 Hb_022880_020--Hb_004074_030 Hb_001178_040 Hb_001178_040 Hb_022880_020--Hb_001178_040 Hb_001950_020 Hb_001950_020 Hb_022880_020--Hb_001950_020 Hb_000015_160 Hb_000015_160 Hb_000991_050--Hb_000015_160 Hb_000991_050--Hb_012753_040 Hb_002774_150 Hb_002774_150 Hb_000991_050--Hb_002774_150 Hb_009674_080 Hb_009674_080 Hb_000991_050--Hb_009674_080 Hb_004324_060 Hb_004324_060 Hb_000991_050--Hb_004324_060 Hb_000139_180 Hb_000139_180 Hb_000991_050--Hb_000139_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.306751 11.9048 1.33379 2.80512 5.49489 3.18948
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.290705 0.0634685 4.20051

CAGE analysis