Hb_001178_040

Information

Type desease resistance
Description Gene Name: ABC_trans_N
Location Contig1178: 72524-88682
Sequence    

Annotation

kegg
ID rcu:RCOM_0023060
description ATP-binding cassette transporter, putative (EC:3.6.3.28)
nr
ID XP_012066453.1
description PREDICTED: ABC transporter G family member 34-like [Jatropha curcas]
swissprot
ID Q7PC84
description ABC transporter G family member 39 OS=Arabidopsis thaliana GN=ABCG39 PE=3 SV=1
trembl
ID B9T794
description ATP-binding cassette transporter, putative OS=Ricinus communis GN=RCOM_0023060 PE=4 SV=1
Gene Ontology
ID GO:0016020
description pleiotropic drug resistance protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05361: 73592-74655
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001178_040 0.0 desease resistance Gene Name: ABC_trans_N PREDICTED: ABC transporter G family member 34-like [Jatropha curcas]
2 Hb_001699_030 0.1503011797 transcription factor TF Family: Orphans PREDICTED: histidine kinase 1 isoform X1 [Jatropha curcas]
3 Hb_154538_010 0.1569107145 - - -
4 Hb_003175_090 0.1695518421 - - hypothetical protein POPTR_0011s01120g [Populus trichocarpa]
5 Hb_000836_210 0.1946340045 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
6 Hb_000342_140 0.1997059082 - - PREDICTED: vacuolar-processing enzyme-like [Jatropha curcas]
7 Hb_003637_020 0.2018196562 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002234_130 0.2053287769 - - ATPP2-A13, putative [Ricinus communis]
9 Hb_000336_190 0.2054201426 - - PREDICTED: UPF0481 protein At3g47200-like [Gossypium raimondii]
10 Hb_093177_010 0.2074620514 - - Phosphoprotein phosphatase [Theobroma cacao]
11 Hb_012258_020 0.2085204325 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
12 Hb_002311_110 0.2108453257 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001541_160 0.2112466616 - - PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]
14 Hb_005656_160 0.2114468542 - - PREDICTED: uncharacterized protein LOC105637448 [Jatropha curcas]
15 Hb_000732_240 0.2120107974 - - PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]
16 Hb_017159_010 0.2158060868 - - -
17 Hb_005568_130 0.2166278563 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
18 Hb_002849_110 0.2204667608 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
19 Hb_000117_060 0.2224410957 - - PREDICTED: uncharacterized protein LOC103949199 [Pyrus x bretschneideri]
20 Hb_006911_020 0.222823783 - - CC-NBS-LRR protein isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_001178_040 Hb_001178_040 Hb_001699_030 Hb_001699_030 Hb_001178_040--Hb_001699_030 Hb_154538_010 Hb_154538_010 Hb_001178_040--Hb_154538_010 Hb_003175_090 Hb_003175_090 Hb_001178_040--Hb_003175_090 Hb_000836_210 Hb_000836_210 Hb_001178_040--Hb_000836_210 Hb_000342_140 Hb_000342_140 Hb_001178_040--Hb_000342_140 Hb_003637_020 Hb_003637_020 Hb_001178_040--Hb_003637_020 Hb_001699_030--Hb_003175_090 Hb_020301_010 Hb_020301_010 Hb_001699_030--Hb_020301_010 Hb_002311_110 Hb_002311_110 Hb_001699_030--Hb_002311_110 Hb_005588_130 Hb_005588_130 Hb_001699_030--Hb_005588_130 Hb_004282_040 Hb_004282_040 Hb_001699_030--Hb_004282_040 Hb_145317_010 Hb_145317_010 Hb_154538_010--Hb_145317_010 Hb_017159_010 Hb_017159_010 Hb_154538_010--Hb_017159_010 Hb_154538_010--Hb_000342_140 Hb_001754_060 Hb_001754_060 Hb_154538_010--Hb_001754_060 Hb_040747_010 Hb_040747_010 Hb_154538_010--Hb_040747_010 Hb_003175_090--Hb_005588_130 Hb_004648_020 Hb_004648_020 Hb_003175_090--Hb_004648_020 Hb_003175_090--Hb_020301_010 Hb_002374_550 Hb_002374_550 Hb_003175_090--Hb_002374_550 Hb_002849_110 Hb_002849_110 Hb_000836_210--Hb_002849_110 Hb_001472_140 Hb_001472_140 Hb_000836_210--Hb_001472_140 Hb_000087_100 Hb_000087_100 Hb_000836_210--Hb_000087_100 Hb_178658_010 Hb_178658_010 Hb_000836_210--Hb_178658_010 Hb_001541_160 Hb_001541_160 Hb_000836_210--Hb_001541_160 Hb_000836_210--Hb_002311_110 Hb_000342_140--Hb_003637_020 Hb_006185_010 Hb_006185_010 Hb_000342_140--Hb_006185_010 Hb_000342_140--Hb_017159_010 Hb_003082_040 Hb_003082_040 Hb_000342_140--Hb_003082_040 Hb_001278_040 Hb_001278_040 Hb_000342_140--Hb_001278_040 Hb_185513_010 Hb_185513_010 Hb_003637_020--Hb_185513_010 Hb_103788_010 Hb_103788_010 Hb_003637_020--Hb_103788_010 Hb_000117_060 Hb_000117_060 Hb_003637_020--Hb_000117_060 Hb_003752_120 Hb_003752_120 Hb_003637_020--Hb_003752_120 Hb_012725_040 Hb_012725_040 Hb_003637_020--Hb_012725_040 Hb_012258_020 Hb_012258_020 Hb_003637_020--Hb_012258_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.125376 1.96496 0.472143 1.57337 0.270075 0.587787
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0292521 0.0383681 0.0442659 0.0455712 0.411636

CAGE analysis