Hb_185513_010

Information

Type -
Description -
Location Contig185513: 1949-4078
Sequence    

Annotation

kegg
ID rcu:RCOM_0885060
description hypothetical protein
nr
ID XP_002522627.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S9F8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0885060 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18147: 2336-3915
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_185513_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_012725_040 0.0740732022 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
3 Hb_003637_020 0.0928955579 - - conserved hypothetical protein [Ricinus communis]
4 Hb_103788_010 0.1198002652 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
5 Hb_056012_010 0.1237730423 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
6 Hb_000117_060 0.1249526547 - - PREDICTED: uncharacterized protein LOC103949199 [Pyrus x bretschneideri]
7 Hb_001865_060 0.129070309 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
8 Hb_003494_060 0.1320738003 - - PREDICTED: uncharacterized protein LOC105644062 isoform X1 [Jatropha curcas]
9 Hb_162074_010 0.1371681428 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
10 Hb_006711_070 0.1429669262 - - hypothetical protein RCOM_1336320 [Ricinus communis]
11 Hb_009897_020 0.1435304204 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
12 Hb_000220_090 0.144219481 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Jatropha curcas]
13 Hb_009838_060 0.148098349 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001258_150 0.1482368131 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
15 Hb_006111_030 0.148538997 - - PREDICTED: phospholipase A(1) LCAT3 isoform X1 [Jatropha curcas]
16 Hb_000803_060 0.1518084672 - - poly(p)/ATP NAD kinase, putative [Ricinus communis]
17 Hb_005203_020 0.1522976654 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
18 Hb_000270_770 0.1535669718 - - PREDICTED: uncharacterized protein LOC105640410 [Jatropha curcas]
19 Hb_003155_020 0.1537812733 - - Rpp4C3 [Medicago truncatula]
20 Hb_003752_120 0.1560843556 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_185513_010 Hb_185513_010 Hb_012725_040 Hb_012725_040 Hb_185513_010--Hb_012725_040 Hb_003637_020 Hb_003637_020 Hb_185513_010--Hb_003637_020 Hb_103788_010 Hb_103788_010 Hb_185513_010--Hb_103788_010 Hb_056012_010 Hb_056012_010 Hb_185513_010--Hb_056012_010 Hb_000117_060 Hb_000117_060 Hb_185513_010--Hb_000117_060 Hb_001865_060 Hb_001865_060 Hb_185513_010--Hb_001865_060 Hb_012725_040--Hb_001865_060 Hb_006111_030 Hb_006111_030 Hb_012725_040--Hb_006111_030 Hb_001258_150 Hb_001258_150 Hb_012725_040--Hb_001258_150 Hb_003494_060 Hb_003494_060 Hb_012725_040--Hb_003494_060 Hb_001141_360 Hb_001141_360 Hb_012725_040--Hb_001141_360 Hb_003637_020--Hb_103788_010 Hb_003637_020--Hb_000117_060 Hb_003752_120 Hb_003752_120 Hb_003637_020--Hb_003752_120 Hb_003637_020--Hb_012725_040 Hb_012258_020 Hb_012258_020 Hb_003637_020--Hb_012258_020 Hb_103788_010--Hb_003752_120 Hb_002915_070 Hb_002915_070 Hb_103788_010--Hb_002915_070 Hb_006054_030 Hb_006054_030 Hb_103788_010--Hb_006054_030 Hb_000732_080 Hb_000732_080 Hb_103788_010--Hb_000732_080 Hb_000803_060 Hb_000803_060 Hb_056012_010--Hb_000803_060 Hb_102100_010 Hb_102100_010 Hb_056012_010--Hb_102100_010 Hb_000220_090 Hb_000220_090 Hb_056012_010--Hb_000220_090 Hb_056012_010--Hb_001258_150 Hb_001662_170 Hb_001662_170 Hb_056012_010--Hb_001662_170 Hb_006711_070 Hb_006711_070 Hb_000117_060--Hb_006711_070 Hb_001437_010 Hb_001437_010 Hb_000117_060--Hb_001437_010 Hb_000117_060--Hb_012258_020 Hb_138585_100 Hb_138585_100 Hb_000117_060--Hb_138585_100 Hb_001865_060--Hb_001141_360 Hb_000062_080 Hb_000062_080 Hb_001865_060--Hb_000062_080 Hb_002485_040 Hb_002485_040 Hb_001865_060--Hb_002485_040 Hb_001865_060--Hb_003494_060 Hb_004032_310 Hb_004032_310 Hb_001865_060--Hb_004032_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.15 138.392 19.6513 39.7407 15.1427 22.6161
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.49314 9.51366 5.59924 14.4533 6.70294

CAGE analysis