Hb_000117_060

Information

Type -
Description -
Location Contig117: 80974-81537
Sequence    

Annotation

kegg
ID pxb:103949199
description uncharacterized LOC103949199
nr
ID XP_009358579.1
description PREDICTED: uncharacterized protein LOC103949199 [Pyrus x bretschneideri]
swissprot
ID -
description -
trembl
ID M5VR81
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009094mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05265: 80927-81874
cDNA
(Sanger)
(ID:Location)		 008_D13.ab1: 80927-81609 , 011_J19.ab1: 80927-81702 , 036_J12.ab1: 80925-81669

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000117_060 0.0 - - PREDICTED: uncharacterized protein LOC103949199 [Pyrus x bretschneideri]
2 Hb_006711_070 0.1057246086 - - hypothetical protein RCOM_1336320 [Ricinus communis]
3 Hb_003637_020 0.1111343473 - - conserved hypothetical protein [Ricinus communis]
4 Hb_185513_010 0.1249526547 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001437_010 0.1285430506 - - PREDICTED: probable receptor-like protein kinase At1g33260 [Jatropha curcas]
6 Hb_012258_020 0.1306430216 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
7 Hb_138585_100 0.1339038758 - - PREDICTED: uncharacterized protein LOC105648740 [Jatropha curcas]
8 Hb_006054_030 0.1360921061 - - PREDICTED: protein GPR107-like [Jatropha curcas]
9 Hb_012725_040 0.1366461814 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
10 Hb_005568_130 0.1402337909 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
11 Hb_002701_210 0.1414828045 - - Protein COBRA precursor, putative [Ricinus communis]
12 Hb_103865_010 0.1422394925 - - hypothetical protein 21 [Hevea brasiliensis]
13 Hb_103788_010 0.1428500803 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
14 Hb_003752_120 0.1428509758 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
15 Hb_000258_370 0.1441350022 - - hypothetical protein [Ricinus communis]
16 Hb_003078_030 0.1446746595 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
17 Hb_000186_200 0.1468930829 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
18 Hb_012787_040 0.1500574182 - - PREDICTED: uncharacterized protein LOC105649794 isoform X2 [Jatropha curcas]
19 Hb_000071_140 0.1508176776 - - PREDICTED: uncharacterized protein LOC105628258 [Jatropha curcas]
20 Hb_001133_010 0.1519456166 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000117_060 Hb_000117_060 Hb_006711_070 Hb_006711_070 Hb_000117_060--Hb_006711_070 Hb_003637_020 Hb_003637_020 Hb_000117_060--Hb_003637_020 Hb_185513_010 Hb_185513_010 Hb_000117_060--Hb_185513_010 Hb_001437_010 Hb_001437_010 Hb_000117_060--Hb_001437_010 Hb_012258_020 Hb_012258_020 Hb_000117_060--Hb_012258_020 Hb_138585_100 Hb_138585_100 Hb_000117_060--Hb_138585_100 Hb_003078_030 Hb_003078_030 Hb_006711_070--Hb_003078_030 Hb_000134_340 Hb_000134_340 Hb_006711_070--Hb_000134_340 Hb_005096_010 Hb_005096_010 Hb_006711_070--Hb_005096_010 Hb_006711_070--Hb_138585_100 Hb_021443_090 Hb_021443_090 Hb_006711_070--Hb_021443_090 Hb_003637_020--Hb_185513_010 Hb_103788_010 Hb_103788_010 Hb_003637_020--Hb_103788_010 Hb_003752_120 Hb_003752_120 Hb_003637_020--Hb_003752_120 Hb_012725_040 Hb_012725_040 Hb_003637_020--Hb_012725_040 Hb_003637_020--Hb_012258_020 Hb_185513_010--Hb_012725_040 Hb_185513_010--Hb_103788_010 Hb_056012_010 Hb_056012_010 Hb_185513_010--Hb_056012_010 Hb_001865_060 Hb_001865_060 Hb_185513_010--Hb_001865_060 Hb_048755_020 Hb_048755_020 Hb_001437_010--Hb_048755_020 Hb_007313_070 Hb_007313_070 Hb_001437_010--Hb_007313_070 Hb_000186_200 Hb_000186_200 Hb_001437_010--Hb_000186_200 Hb_002701_210 Hb_002701_210 Hb_001437_010--Hb_002701_210 Hb_000071_140 Hb_000071_140 Hb_001437_010--Hb_000071_140 Hb_004108_240 Hb_004108_240 Hb_001437_010--Hb_004108_240 Hb_005568_130 Hb_005568_130 Hb_012258_020--Hb_005568_130 Hb_041895_040 Hb_041895_040 Hb_012258_020--Hb_041895_040 Hb_000594_110 Hb_000594_110 Hb_012258_020--Hb_000594_110 Hb_001518_060 Hb_001518_060 Hb_012258_020--Hb_001518_060 Hb_000258_370 Hb_000258_370 Hb_138585_100--Hb_000258_370 Hb_006054_030 Hb_006054_030 Hb_138585_100--Hb_006054_030 Hb_002071_050 Hb_002071_050 Hb_138585_100--Hb_002071_050 Hb_000252_210 Hb_000252_210 Hb_138585_100--Hb_000252_210 Hb_000270_230 Hb_000270_230 Hb_138585_100--Hb_000270_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
84.6079 382.134 93.5244 170.443 42.6063 56.5147
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.2739 23.5231 26.8619 25.1452 45.7151

CAGE analysis