Hb_006711_070

Information

Type -
Description -
Location Contig6711: 70229-71710
Sequence    

Annotation

kegg
ID rcu:RCOM_1336320
description hypothetical protein
nr
ID XP_002523173.1
description hypothetical protein RCOM_1336320 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SB13
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1336320 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53446: 70210-72031
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006711_070 0.0 - - hypothetical protein RCOM_1336320 [Ricinus communis]
2 Hb_000117_060 0.1057246086 - - PREDICTED: uncharacterized protein LOC103949199 [Pyrus x bretschneideri]
3 Hb_003078_030 0.1162273289 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
4 Hb_000134_340 0.1220437417 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 5 [Jatropha curcas]
5 Hb_005096_010 0.1252637949 - - PREDICTED: uncharacterized protein LOC105641403 [Jatropha curcas]
6 Hb_138585_100 0.1265787917 - - PREDICTED: uncharacterized protein LOC105648740 [Jatropha curcas]
7 Hb_021443_090 0.1277522159 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Jatropha curcas]
8 Hb_000258_370 0.1278075735 - - hypothetical protein [Ricinus communis]
9 Hb_006054_030 0.1336545441 - - PREDICTED: protein GPR107-like [Jatropha curcas]
10 Hb_002701_210 0.134761989 - - Protein COBRA precursor, putative [Ricinus communis]
11 Hb_005000_300 0.1355885998 transcription factor TF Family: TRAF putative regulatory protein NPR1 [Hevea brasiliensis]
12 Hb_000186_200 0.135746524 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
13 Hb_000608_280 0.1385913816 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
14 Hb_030116_010 0.1422059515 - - F-box protein, atfbl3, putative [Ricinus communis]
15 Hb_185513_010 0.1429669262 - - conserved hypothetical protein [Ricinus communis]
16 Hb_103788_010 0.1470416076 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
17 Hb_000465_080 0.1479625674 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]
18 Hb_005725_060 0.1489842926 - - PREDICTED: U-box domain-containing protein 30-like [Jatropha curcas]
19 Hb_012725_040 0.1494996201 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
20 Hb_001246_120 0.1495690648 - - PREDICTED: uncharacterized protein LOC105643270 [Jatropha curcas]

Gene co-expression network

sample Hb_006711_070 Hb_006711_070 Hb_000117_060 Hb_000117_060 Hb_006711_070--Hb_000117_060 Hb_003078_030 Hb_003078_030 Hb_006711_070--Hb_003078_030 Hb_000134_340 Hb_000134_340 Hb_006711_070--Hb_000134_340 Hb_005096_010 Hb_005096_010 Hb_006711_070--Hb_005096_010 Hb_138585_100 Hb_138585_100 Hb_006711_070--Hb_138585_100 Hb_021443_090 Hb_021443_090 Hb_006711_070--Hb_021443_090 Hb_003637_020 Hb_003637_020 Hb_000117_060--Hb_003637_020 Hb_185513_010 Hb_185513_010 Hb_000117_060--Hb_185513_010 Hb_001437_010 Hb_001437_010 Hb_000117_060--Hb_001437_010 Hb_012258_020 Hb_012258_020 Hb_000117_060--Hb_012258_020 Hb_000117_060--Hb_138585_100 Hb_000056_300 Hb_000056_300 Hb_003078_030--Hb_000056_300 Hb_000186_200 Hb_000186_200 Hb_003078_030--Hb_000186_200 Hb_000163_230 Hb_000163_230 Hb_003078_030--Hb_000163_230 Hb_001009_090 Hb_001009_090 Hb_003078_030--Hb_001009_090 Hb_005000_300 Hb_005000_300 Hb_003078_030--Hb_005000_300 Hb_000836_370 Hb_000836_370 Hb_003078_030--Hb_000836_370 Hb_002119_090 Hb_002119_090 Hb_000134_340--Hb_002119_090 Hb_000134_340--Hb_003078_030 Hb_000608_280 Hb_000608_280 Hb_000134_340--Hb_000608_280 Hb_006738_050 Hb_006738_050 Hb_000134_340--Hb_006738_050 Hb_000134_340--Hb_001009_090 Hb_000363_370 Hb_000363_370 Hb_000134_340--Hb_000363_370 Hb_005725_060 Hb_005725_060 Hb_005096_010--Hb_005725_060 Hb_006054_030 Hb_006054_030 Hb_005096_010--Hb_006054_030 Hb_055488_020 Hb_055488_020 Hb_005096_010--Hb_055488_020 Hb_004218_090 Hb_004218_090 Hb_005096_010--Hb_004218_090 Hb_000732_080 Hb_000732_080 Hb_005096_010--Hb_000732_080 Hb_000258_370 Hb_000258_370 Hb_138585_100--Hb_000258_370 Hb_138585_100--Hb_006054_030 Hb_002071_050 Hb_002071_050 Hb_138585_100--Hb_002071_050 Hb_000252_210 Hb_000252_210 Hb_138585_100--Hb_000252_210 Hb_000270_230 Hb_000270_230 Hb_138585_100--Hb_000270_230 Hb_001146_020 Hb_001146_020 Hb_021443_090--Hb_001146_020 Hb_005015_080 Hb_005015_080 Hb_021443_090--Hb_005015_080 Hb_000815_240 Hb_000815_240 Hb_021443_090--Hb_000815_240 Hb_000418_010 Hb_000418_010 Hb_021443_090--Hb_000418_010 Hb_000991_040 Hb_000991_040 Hb_021443_090--Hb_000991_040 Hb_006198_020 Hb_006198_020 Hb_021443_090--Hb_006198_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.678 80.8156 21.0139 42.3689 14.1526 15.8189
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.9833 10.563 8.37436 9.75685 6.82408

CAGE analysis