Hb_000363_370

Information

Type -
Description -
Location Contig363: 328535-332499
Sequence    

Annotation

kegg
ID rcu:RCOM_0546910
description Lipopolysaccharide-binding protein precursor, putative
nr
ID XP_012070922.1
description PREDICTED: putative BPI/LBP family protein At1g04970 [Jatropha curcas]
swissprot
ID Q9MAU5
description Putative BPI/LBP family protein At1g04970 OS=Arabidopsis thaliana GN=At1g04970 PE=2 SV=1
trembl
ID A0A067L574
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00961 PE=4 SV=1
Gene Ontology
ID GO:0005615
description bpi lbp family protein at1g04970

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37331: 330748-331274 , PASA_asmbl_37332: 331388-332208
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000363_370 0.0 - - PREDICTED: putative BPI/LBP family protein At1g04970 [Jatropha curcas]
2 Hb_007894_130 0.0957013304 - - hypothetical protein RCOM_0584960 [Ricinus communis]
3 Hb_000406_110 0.1023176586 - - PREDICTED: transmembrane protein adipocyte-associated 1 [Jatropha curcas]
4 Hb_000059_020 0.1047929584 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]
5 Hb_144744_010 0.1076489583 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
6 Hb_000134_340 0.1089363802 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 5 [Jatropha curcas]
7 Hb_009028_010 0.1092539645 - - PREDICTED: probable disease resistance protein At1g12280 [Jatropha curcas]
8 Hb_006198_020 0.1095529312 - - PREDICTED: uncharacterized protein LOC105644416 [Jatropha curcas]
9 Hb_127599_010 0.1102273014 - - hypothetical protein CISIN_1g0010462mg, partial [Citrus sinensis]
10 Hb_002119_090 0.1113461331 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
11 Hb_004994_090 0.1177542356 - - PREDICTED: uncharacterized protein LOC105643033 isoform X2 [Jatropha curcas]
12 Hb_004648_050 0.1199141188 - - ring finger protein, putative [Ricinus communis]
13 Hb_000009_330 0.1214160522 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
14 Hb_000170_240 0.1225990429 - - PREDICTED: auxilin-related protein 1 [Jatropha curcas]
15 Hb_001541_250 0.1228359589 - - PREDICTED: integrator complex subunit 9 homolog isoform X1 [Jatropha curcas]
16 Hb_001055_030 0.1228834879 - - PREDICTED: F-box/LRR-repeat protein 14 isoform X1 [Jatropha curcas]
17 Hb_005203_020 0.1240305839 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
18 Hb_000418_010 0.1248554308 - - PREDICTED: repressor of RNA polymerase III transcription MAF1 homolog [Jatropha curcas]
19 Hb_000069_130 0.1255018337 - - PREDICTED: uncharacterized protein LOC105642829 isoform X1 [Jatropha curcas]
20 Hb_000236_410 0.1262834692 - - Paramyosin, putative [Ricinus communis]

Gene co-expression network

sample Hb_000363_370 Hb_000363_370 Hb_007894_130 Hb_007894_130 Hb_000363_370--Hb_007894_130 Hb_000406_110 Hb_000406_110 Hb_000363_370--Hb_000406_110 Hb_000059_020 Hb_000059_020 Hb_000363_370--Hb_000059_020 Hb_144744_010 Hb_144744_010 Hb_000363_370--Hb_144744_010 Hb_000134_340 Hb_000134_340 Hb_000363_370--Hb_000134_340 Hb_009028_010 Hb_009028_010 Hb_000363_370--Hb_009028_010 Hb_001055_030 Hb_001055_030 Hb_007894_130--Hb_001055_030 Hb_000061_490 Hb_000061_490 Hb_007894_130--Hb_000061_490 Hb_000780_170 Hb_000780_170 Hb_007894_130--Hb_000780_170 Hb_005260_010 Hb_005260_010 Hb_007894_130--Hb_005260_010 Hb_000768_180 Hb_000768_180 Hb_007894_130--Hb_000768_180 Hb_000236_220 Hb_000236_220 Hb_007894_130--Hb_000236_220 Hb_002400_140 Hb_002400_140 Hb_000406_110--Hb_002400_140 Hb_000406_110--Hb_144744_010 Hb_004648_050 Hb_004648_050 Hb_000406_110--Hb_004648_050 Hb_000406_110--Hb_000059_020 Hb_032808_030 Hb_032808_030 Hb_000406_110--Hb_032808_030 Hb_006573_210 Hb_006573_210 Hb_000406_110--Hb_006573_210 Hb_000862_040 Hb_000862_040 Hb_000059_020--Hb_000862_040 Hb_000940_200 Hb_000940_200 Hb_000059_020--Hb_000940_200 Hb_005568_040 Hb_005568_040 Hb_000059_020--Hb_005568_040 Hb_000700_060 Hb_000700_060 Hb_000059_020--Hb_000700_060 Hb_000197_030 Hb_000197_030 Hb_000059_020--Hb_000197_030 Hb_000009_330 Hb_000009_330 Hb_000059_020--Hb_000009_330 Hb_144744_010--Hb_009028_010 Hb_000236_410 Hb_000236_410 Hb_144744_010--Hb_000236_410 Hb_001935_140 Hb_001935_140 Hb_144744_010--Hb_001935_140 Hb_004371_010 Hb_004371_010 Hb_144744_010--Hb_004371_010 Hb_003060_090 Hb_003060_090 Hb_144744_010--Hb_003060_090 Hb_002119_090 Hb_002119_090 Hb_000134_340--Hb_002119_090 Hb_003078_030 Hb_003078_030 Hb_000134_340--Hb_003078_030 Hb_000608_280 Hb_000608_280 Hb_000134_340--Hb_000608_280 Hb_006738_050 Hb_006738_050 Hb_000134_340--Hb_006738_050 Hb_001009_090 Hb_001009_090 Hb_000134_340--Hb_001009_090 Hb_005188_040 Hb_005188_040 Hb_009028_010--Hb_005188_040 Hb_001541_250 Hb_001541_250 Hb_009028_010--Hb_001541_250 Hb_009028_010--Hb_001935_140 Hb_004785_030 Hb_004785_030 Hb_009028_010--Hb_004785_030 Hb_007054_040 Hb_007054_040 Hb_009028_010--Hb_007054_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.87784 8.1645 2.12723 3.6177 2.26248 2.99796
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.63246 1.54233 0.996935 2.54736 1.15671

CAGE analysis