Hb_000608_280

Information

Type -
Description -
Location Contig608: 132586-140028
Sequence    

Annotation

kegg
ID rcu:RCOM_1077820
description Aspartic proteinase Asp1 precursor, putative (EC:3.4.23.3)
nr
ID XP_002514831.1
description Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
swissprot
ID Q9S9K4
description Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2
trembl
ID B9RM62
description Aspartic proteinase Asp1, putative OS=Ricinus communis GN=RCOM_1077820 PE=4 SV=1
Gene Ontology
ID GO:0004190
description aspartic proteinase-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50851: 132589-136164
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000608_280 0.0 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
2 Hb_001369_780 0.0982279018 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000134_340 0.1027484612 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 5 [Jatropha curcas]
4 Hb_001009_090 0.1054920343 - - CDK protein [Hevea brasiliensis]
5 Hb_004917_040 0.109174216 - - hypothetical protein POPTR_0009s03470g [Populus trichocarpa]
6 Hb_001376_010 0.1103541748 - - diacylglycerol kinase, alpha, putative [Ricinus communis]
7 Hb_002248_130 0.1127163631 - - ubiquitin ligase protein cop1, putative [Ricinus communis]
8 Hb_000163_230 0.1134629649 - - Phytochrome A-associated F-box protein, putative [Ricinus communis]
9 Hb_000649_250 0.1154094258 transcription factor TF Family: C2H2 PREDICTED: UBX domain-containing protein 6 [Jatropha curcas]
10 Hb_000523_030 0.1158675724 - - PREDICTED: uncharacterized protein LOC105643073 [Jatropha curcas]
11 Hb_033152_090 0.1160513876 - - PREDICTED: serine/threonine-protein kinase SRK2E isoform X2 [Gossypium raimondii]
12 Hb_006054_030 0.1163140404 - - PREDICTED: protein GPR107-like [Jatropha curcas]
13 Hb_000186_200 0.1182825014 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
14 Hb_003078_030 0.1190502304 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
15 Hb_005288_140 0.1191583536 - - PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta-like [Jatropha curcas]
16 Hb_001410_130 0.1219408217 - - hypothetical protein POPTR_0001s10880g [Populus trichocarpa]
17 Hb_000418_010 0.1236907894 - - PREDICTED: repressor of RNA polymerase III transcription MAF1 homolog [Jatropha curcas]
18 Hb_000035_050 0.1262309808 - - PREDICTED: probable CCR4-associated factor 1 homolog 7 [Jatropha curcas]
19 Hb_000197_030 0.1262387777 - - hypothetical protein RCOM_1447500 [Ricinus communis]
20 Hb_002965_050 0.1267589414 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR2 [Jatropha curcas]

Gene co-expression network

sample Hb_000608_280 Hb_000608_280 Hb_001369_780 Hb_001369_780 Hb_000608_280--Hb_001369_780 Hb_000134_340 Hb_000134_340 Hb_000608_280--Hb_000134_340 Hb_001009_090 Hb_001009_090 Hb_000608_280--Hb_001009_090 Hb_004917_040 Hb_004917_040 Hb_000608_280--Hb_004917_040 Hb_001376_010 Hb_001376_010 Hb_000608_280--Hb_001376_010 Hb_002248_130 Hb_002248_130 Hb_000608_280--Hb_002248_130 Hb_006054_030 Hb_006054_030 Hb_001369_780--Hb_006054_030 Hb_000069_780 Hb_000069_780 Hb_001369_780--Hb_000069_780 Hb_001369_780--Hb_001009_090 Hb_001410_130 Hb_001410_130 Hb_001369_780--Hb_001410_130 Hb_000270_230 Hb_000270_230 Hb_001369_780--Hb_000270_230 Hb_002119_090 Hb_002119_090 Hb_000134_340--Hb_002119_090 Hb_003078_030 Hb_003078_030 Hb_000134_340--Hb_003078_030 Hb_006738_050 Hb_006738_050 Hb_000134_340--Hb_006738_050 Hb_000134_340--Hb_001009_090 Hb_000363_370 Hb_000363_370 Hb_000134_340--Hb_000363_370 Hb_001009_090--Hb_001410_130 Hb_004526_010 Hb_004526_010 Hb_001009_090--Hb_004526_010 Hb_000163_230 Hb_000163_230 Hb_001009_090--Hb_000163_230 Hb_000941_080 Hb_000941_080 Hb_001009_090--Hb_000941_080 Hb_005649_090 Hb_005649_090 Hb_001009_090--Hb_005649_090 Hb_000186_200 Hb_000186_200 Hb_001009_090--Hb_000186_200 Hb_004917_040--Hb_002248_130 Hb_003540_250 Hb_003540_250 Hb_004917_040--Hb_003540_250 Hb_021443_090 Hb_021443_090 Hb_004917_040--Hb_021443_090 Hb_005015_080 Hb_005015_080 Hb_004917_040--Hb_005015_080 Hb_004917_040--Hb_001376_010 Hb_000035_050 Hb_000035_050 Hb_001376_010--Hb_000035_050 Hb_000638_280 Hb_000638_280 Hb_001376_010--Hb_000638_280 Hb_004117_170 Hb_004117_170 Hb_001376_010--Hb_004117_170 Hb_004108_240 Hb_004108_240 Hb_001376_010--Hb_004108_240 Hb_002965_050 Hb_002965_050 Hb_001376_010--Hb_002965_050 Hb_000156_090 Hb_000156_090 Hb_001376_010--Hb_000156_090 Hb_006615_030 Hb_006615_030 Hb_002248_130--Hb_006615_030 Hb_002248_130--Hb_003540_250 Hb_002811_040 Hb_002811_040 Hb_002248_130--Hb_002811_040 Hb_005288_140 Hb_005288_140 Hb_002248_130--Hb_005288_140 Hb_000179_190 Hb_000179_190 Hb_002248_130--Hb_000179_190 Hb_017214_040 Hb_017214_040 Hb_002248_130--Hb_017214_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.6643 29.6812 16.8055 19.8721 4.76989 9.01917
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.82978 5.68118 5.93504 5.02994 7.01411

CAGE analysis