Hb_000069_780

Information

Type -
Description -
Location Contig69: 768986-773779
Sequence    

Annotation

kegg
ID rcu:RCOM_1617290
description atpob1, putative
nr
ID XP_002511951.1
description atpob1, putative [Ricinus communis]
swissprot
ID Q9FPW6
description BTB/POZ domain-containing protein POB1 OS=Arabidopsis thaliana GN=POB1 PE=2 SV=2
trembl
ID B9RE12
description Atpob1, putative OS=Ricinus communis GN=RCOM_1617290 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54308: 769050-773679
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_780 0.0 - - atpob1, putative [Ricinus communis]
2 Hb_000270_230 0.0789806854 - - PREDICTED: probable beta-1,3-galactosyltransferase 19 [Jatropha curcas]
3 Hb_006054_030 0.0821304316 - - PREDICTED: protein GPR107-like [Jatropha curcas]
4 Hb_001369_780 0.0833250134 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000059_130 0.0957137926 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
6 Hb_002387_040 0.1000489688 - - protein transporter, putative [Ricinus communis]
7 Hb_003752_120 0.1001657297 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
8 Hb_000941_080 0.1020977548 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X3 [Populus euphratica]
9 Hb_000371_060 0.1036586427 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
10 Hb_001257_100 0.1037258205 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
11 Hb_001410_130 0.1058070208 - - hypothetical protein POPTR_0001s10880g [Populus trichocarpa]
12 Hb_003599_030 0.1063277656 - - PREDICTED: glucan endo-1,3-beta-glucosidase 4 isoform X3 [Jatropha curcas]
13 Hb_001911_010 0.1066024618 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
14 Hb_003849_220 0.1110327831 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Jatropha curcas]
15 Hb_143766_030 0.1115377749 - - protein with unknown function [Ricinus communis]
16 Hb_000705_180 0.1124007834 - - hypothetical protein JCGZ_02923 [Jatropha curcas]
17 Hb_004994_300 0.1130345594 - - synaptotagmin, putative [Ricinus communis]
18 Hb_000200_170 0.1143315518 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Populus euphratica]
19 Hb_001195_350 0.1144778467 - - hypothetical protein JCGZ_04423 [Jatropha curcas]
20 Hb_007031_040 0.1150941121 transcription factor TF Family: bZIP PREDICTED: bZIP transcription factor 17-like [Jatropha curcas]

Gene co-expression network

sample Hb_000069_780 Hb_000069_780 Hb_000270_230 Hb_000270_230 Hb_000069_780--Hb_000270_230 Hb_006054_030 Hb_006054_030 Hb_000069_780--Hb_006054_030 Hb_001369_780 Hb_001369_780 Hb_000069_780--Hb_001369_780 Hb_000059_130 Hb_000059_130 Hb_000069_780--Hb_000059_130 Hb_002387_040 Hb_002387_040 Hb_000069_780--Hb_002387_040 Hb_003752_120 Hb_003752_120 Hb_000069_780--Hb_003752_120 Hb_000856_020 Hb_000856_020 Hb_000270_230--Hb_000856_020 Hb_000676_040 Hb_000676_040 Hb_000270_230--Hb_000676_040 Hb_001257_100 Hb_001257_100 Hb_000270_230--Hb_001257_100 Hb_000270_230--Hb_006054_030 Hb_000941_080 Hb_000941_080 Hb_000270_230--Hb_000941_080 Hb_006054_030--Hb_000941_080 Hb_006054_030--Hb_001369_780 Hb_001410_130 Hb_001410_130 Hb_006054_030--Hb_001410_130 Hb_000460_060 Hb_000460_060 Hb_006054_030--Hb_000460_060 Hb_000608_280 Hb_000608_280 Hb_001369_780--Hb_000608_280 Hb_001009_090 Hb_001009_090 Hb_001369_780--Hb_001009_090 Hb_001369_780--Hb_001410_130 Hb_001369_780--Hb_000270_230 Hb_000216_020 Hb_000216_020 Hb_000059_130--Hb_000216_020 Hb_008667_060 Hb_008667_060 Hb_000059_130--Hb_008667_060 Hb_000473_150 Hb_000473_150 Hb_000059_130--Hb_000473_150 Hb_000805_190 Hb_000805_190 Hb_000059_130--Hb_000805_190 Hb_000371_060 Hb_000371_060 Hb_000059_130--Hb_000371_060 Hb_002248_120 Hb_002248_120 Hb_002387_040--Hb_002248_120 Hb_000699_210 Hb_000699_210 Hb_002387_040--Hb_000699_210 Hb_024714_070 Hb_024714_070 Hb_002387_040--Hb_024714_070 Hb_000418_050 Hb_000418_050 Hb_002387_040--Hb_000418_050 Hb_005288_050 Hb_005288_050 Hb_002387_040--Hb_005288_050 Hb_002804_010 Hb_002804_010 Hb_002387_040--Hb_002804_010 Hb_012787_040 Hb_012787_040 Hb_003752_120--Hb_012787_040 Hb_004032_310 Hb_004032_310 Hb_003752_120--Hb_004032_310 Hb_001662_170 Hb_001662_170 Hb_003752_120--Hb_001662_170 Hb_002915_070 Hb_002915_070 Hb_003752_120--Hb_002915_070 Hb_103788_010 Hb_103788_010 Hb_003752_120--Hb_103788_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.96446 63.1083 21.7494 36.175 12.8801 7.94035
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.23462 8.31709 8.28529 20.5827 17.7089

CAGE analysis