Hb_002915_070

Information

Type -
Description -
Location Contig2915: 143805-144836
Sequence    

Annotation

kegg
ID rcu:RCOM_0436110
description WD-repeat protein, putative
nr
ID XP_012089919.1
description PREDICTED: protein TRANSPARENT TESTA GLABRA 1 [Jatropha curcas]
swissprot
ID Q9XGN1
description Protein TRANSPARENT TESTA GLABRA 1 OS=Arabidopsis thaliana GN=TTG1 PE=1 SV=1
trembl
ID A0A067LCP7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01523 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transducin wd40 repeat-like superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30578: 143874-144928
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002915_070 0.0 - - PREDICTED: protein TRANSPARENT TESTA GLABRA 1 [Jatropha curcas]
2 Hb_000805_230 0.0515973249 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
3 Hb_000448_060 0.0855103482 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
4 Hb_000179_230 0.0964282148 - - PREDICTED: myosin-17 [Jatropha curcas]
5 Hb_003752_120 0.0983068915 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
6 Hb_004032_310 0.1005572698 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 14 [Jatropha curcas]
7 Hb_103788_010 0.1149895748 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
8 Hb_002154_020 0.1156821599 - - protein with unknown function [Ricinus communis]
9 Hb_000116_210 0.1181977738 - - PREDICTED: uncharacterized protein LOC105628567 [Jatropha curcas]
10 Hb_006054_030 0.1189261413 - - PREDICTED: protein GPR107-like [Jatropha curcas]
11 Hb_004994_300 0.1195011975 - - synaptotagmin, putative [Ricinus communis]
12 Hb_000062_080 0.1197929456 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
13 Hb_005496_180 0.1201719009 - - PREDICTED: U-box domain-containing protein 4-like [Jatropha curcas]
14 Hb_000120_160 0.1236648196 - - unnamed protein product [Vitis vinifera]
15 Hb_000941_080 0.1242759651 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X3 [Populus euphratica]
16 Hb_000460_060 0.1246017395 - - importin beta-1, putative [Ricinus communis]
17 Hb_002053_130 0.1305293249 - - UDP-glucose 4-epimerase, putative [Ricinus communis]
18 Hb_012787_040 0.1307393704 - - PREDICTED: uncharacterized protein LOC105649794 isoform X2 [Jatropha curcas]
19 Hb_000270_230 0.1311027251 - - PREDICTED: probable beta-1,3-galactosyltransferase 19 [Jatropha curcas]
20 Hb_003605_220 0.1315632187 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]

Gene co-expression network

sample Hb_002915_070 Hb_002915_070 Hb_000805_230 Hb_000805_230 Hb_002915_070--Hb_000805_230 Hb_000448_060 Hb_000448_060 Hb_002915_070--Hb_000448_060 Hb_000179_230 Hb_000179_230 Hb_002915_070--Hb_000179_230 Hb_003752_120 Hb_003752_120 Hb_002915_070--Hb_003752_120 Hb_004032_310 Hb_004032_310 Hb_002915_070--Hb_004032_310 Hb_103788_010 Hb_103788_010 Hb_002915_070--Hb_103788_010 Hb_000805_230--Hb_000179_230 Hb_000120_160 Hb_000120_160 Hb_000805_230--Hb_000120_160 Hb_000116_210 Hb_000116_210 Hb_000805_230--Hb_000116_210 Hb_000805_230--Hb_004032_310 Hb_000805_230--Hb_000448_060 Hb_000448_060--Hb_004032_310 Hb_000062_080 Hb_000062_080 Hb_000448_060--Hb_000062_080 Hb_002154_020 Hb_002154_020 Hb_000448_060--Hb_002154_020 Hb_001865_060 Hb_001865_060 Hb_000448_060--Hb_001865_060 Hb_004994_300 Hb_004994_300 Hb_000179_230--Hb_004994_300 Hb_000417_420 Hb_000417_420 Hb_000179_230--Hb_000417_420 Hb_000179_230--Hb_103788_010 Hb_000460_060 Hb_000460_060 Hb_000179_230--Hb_000460_060 Hb_012787_040 Hb_012787_040 Hb_003752_120--Hb_012787_040 Hb_003752_120--Hb_004032_310 Hb_001662_170 Hb_001662_170 Hb_003752_120--Hb_001662_170 Hb_000069_780 Hb_000069_780 Hb_003752_120--Hb_000069_780 Hb_003752_120--Hb_103788_010 Hb_001489_120 Hb_001489_120 Hb_004032_310--Hb_001489_120 Hb_004032_310--Hb_001662_170 Hb_004032_310--Hb_004994_300 Hb_003637_020 Hb_003637_020 Hb_103788_010--Hb_003637_020 Hb_185513_010 Hb_185513_010 Hb_103788_010--Hb_185513_010 Hb_006054_030 Hb_006054_030 Hb_103788_010--Hb_006054_030 Hb_000732_080 Hb_000732_080 Hb_103788_010--Hb_000732_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.8795 52.6689 11.4058 15.8946 5.64033 7.79907
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.26517 4.21632 8.9783 11.1208 8.01595

CAGE analysis