Hb_000805_230

Information

Type -
Description -
Location Contig805: 216430-225407
Sequence    

Annotation

kegg
ID pxb:103964669
description oxysterol-binding protein-related protein 3C-like
nr
ID XP_012067017.1
description PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
swissprot
ID Q93Y40
description Oxysterol-binding protein-related protein 3C OS=Arabidopsis thaliana GN=ORP3C PE=2 SV=1
trembl
ID A0A067L4Y1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02983 PE=3 SV=1
Gene Ontology
ID GO:0005829
description oxysterol-binding protein 3c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58986: 202444-219352 , PASA_asmbl_58987: 202444-225161 , PASA_asmbl_58988: 221937-222875
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000805_230 0.0 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
2 Hb_002915_070 0.0515973249 - - PREDICTED: protein TRANSPARENT TESTA GLABRA 1 [Jatropha curcas]
3 Hb_000179_230 0.1002404989 - - PREDICTED: myosin-17 [Jatropha curcas]
4 Hb_000120_160 0.1020205287 - - unnamed protein product [Vitis vinifera]
5 Hb_000116_210 0.1030404449 - - PREDICTED: uncharacterized protein LOC105628567 [Jatropha curcas]
6 Hb_004032_310 0.103918066 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 14 [Jatropha curcas]
7 Hb_000448_060 0.1062789865 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
8 Hb_003752_120 0.1078246509 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
9 Hb_002154_020 0.1142674812 - - protein with unknown function [Ricinus communis]
10 Hb_005496_180 0.1161717226 - - PREDICTED: U-box domain-containing protein 4-like [Jatropha curcas]
11 Hb_004994_300 0.1183425267 - - synaptotagmin, putative [Ricinus communis]
12 Hb_002876_250 0.1221077003 - - PREDICTED: receptor-like protein kinase 2 [Jatropha curcas]
13 Hb_000460_060 0.1221682478 - - importin beta-1, putative [Ricinus communis]
14 Hb_006054_030 0.1268753285 - - PREDICTED: protein GPR107-like [Jatropha curcas]
15 Hb_000069_780 0.1291787412 - - atpob1, putative [Ricinus communis]
16 Hb_003605_220 0.1297585412 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
17 Hb_000062_080 0.1307748953 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
18 Hb_001288_070 0.1308803237 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
19 Hb_000941_080 0.1311635544 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X3 [Populus euphratica]
20 Hb_012787_040 0.1312898454 - - PREDICTED: uncharacterized protein LOC105649794 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000805_230 Hb_000805_230 Hb_002915_070 Hb_002915_070 Hb_000805_230--Hb_002915_070 Hb_000179_230 Hb_000179_230 Hb_000805_230--Hb_000179_230 Hb_000120_160 Hb_000120_160 Hb_000805_230--Hb_000120_160 Hb_000116_210 Hb_000116_210 Hb_000805_230--Hb_000116_210 Hb_004032_310 Hb_004032_310 Hb_000805_230--Hb_004032_310 Hb_000448_060 Hb_000448_060 Hb_000805_230--Hb_000448_060 Hb_002915_070--Hb_000448_060 Hb_002915_070--Hb_000179_230 Hb_003752_120 Hb_003752_120 Hb_002915_070--Hb_003752_120 Hb_002915_070--Hb_004032_310 Hb_103788_010 Hb_103788_010 Hb_002915_070--Hb_103788_010 Hb_004994_300 Hb_004994_300 Hb_000179_230--Hb_004994_300 Hb_000417_420 Hb_000417_420 Hb_000179_230--Hb_000417_420 Hb_000179_230--Hb_103788_010 Hb_000460_060 Hb_000460_060 Hb_000179_230--Hb_000460_060 Hb_002876_250 Hb_002876_250 Hb_000120_160--Hb_002876_250 Hb_000120_160--Hb_000116_210 Hb_005496_180 Hb_005496_180 Hb_000120_160--Hb_005496_180 Hb_001288_070 Hb_001288_070 Hb_000120_160--Hb_001288_070 Hb_002154_020 Hb_002154_020 Hb_000120_160--Hb_002154_020 Hb_000116_210--Hb_002876_250 Hb_000116_210--Hb_001288_070 Hb_000116_210--Hb_002154_020 Hb_023344_060 Hb_023344_060 Hb_000116_210--Hb_023344_060 Hb_004032_310--Hb_003752_120 Hb_004032_310--Hb_000448_060 Hb_001489_120 Hb_001489_120 Hb_004032_310--Hb_001489_120 Hb_001662_170 Hb_001662_170 Hb_004032_310--Hb_001662_170 Hb_004032_310--Hb_004994_300 Hb_000062_080 Hb_000062_080 Hb_000448_060--Hb_000062_080 Hb_000448_060--Hb_002154_020 Hb_001865_060 Hb_001865_060 Hb_000448_060--Hb_001865_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.32735 100.342 20.7052 28.1524 10.9549 9.1926
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.21761 8.13491 17.3874 20.6703 17.5188

CAGE analysis