Hb_000417_420

Information

Type -
Description -
Location Contig417: 356307-358460
Sequence    

Annotation

kegg
ID rcu:RCOM_1251990
description ubiquitin-protein ligase, putative
nr
ID XP_012091836.1
description PREDICTED: U-box domain-containing protein 17 [Jatropha curcas]
swissprot
ID Q9C7R6
description U-box domain-containing protein 17 OS=Arabidopsis thaliana GN=PUB17 PE=2 SV=1
trembl
ID A0A067JBJ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21613 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 17

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000417_420 0.0 - - PREDICTED: U-box domain-containing protein 17 [Jatropha curcas]
2 Hb_012107_010 0.1191908261 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
3 Hb_000179_230 0.1423183898 - - PREDICTED: myosin-17 [Jatropha curcas]
4 Hb_002053_130 0.1543717077 - - UDP-glucose 4-epimerase, putative [Ricinus communis]
5 Hb_001437_010 0.1596805869 - - PREDICTED: probable receptor-like protein kinase At1g33260 [Jatropha curcas]
6 Hb_028207_040 0.1622241088 - - PREDICTED: beta-hexosaminidase 2 [Jatropha curcas]
7 Hb_001472_130 0.1629370589 - - PREDICTED: uncharacterized protein LOC105645786 [Jatropha curcas]
8 Hb_000805_230 0.1656182997 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
9 Hb_001511_190 0.1689630974 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
10 Hb_002759_260 0.1692729419 - - PREDICTED: probable galacturonosyltransferase-like 9 [Jatropha curcas]
11 Hb_005545_070 0.1745411749 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
12 Hb_001794_060 0.1748085653 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001369_570 0.176349744 - - hypothetical protein JCGZ_26236 [Jatropha curcas]
14 Hb_005496_180 0.1775832352 - - PREDICTED: U-box domain-containing protein 4-like [Jatropha curcas]
15 Hb_000008_110 0.1793195401 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Gossypium raimondii]
16 Hb_002572_050 0.1793874267 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
17 Hb_000120_160 0.1797963861 - - unnamed protein product [Vitis vinifera]
18 Hb_001944_020 0.1808497083 - - PREDICTED: uncharacterized protein LOC105636535 [Jatropha curcas]
19 Hb_002915_070 0.1858645912 - - PREDICTED: protein TRANSPARENT TESTA GLABRA 1 [Jatropha curcas]
20 Hb_003411_030 0.186305644 - - hypothetical protein POPTR_0010s13590g [Populus trichocarpa]

Gene co-expression network

sample Hb_000417_420 Hb_000417_420 Hb_012107_010 Hb_012107_010 Hb_000417_420--Hb_012107_010 Hb_000179_230 Hb_000179_230 Hb_000417_420--Hb_000179_230 Hb_002053_130 Hb_002053_130 Hb_000417_420--Hb_002053_130 Hb_001437_010 Hb_001437_010 Hb_000417_420--Hb_001437_010 Hb_028207_040 Hb_028207_040 Hb_000417_420--Hb_028207_040 Hb_001472_130 Hb_001472_130 Hb_000417_420--Hb_001472_130 Hb_012107_010--Hb_002053_130 Hb_001944_020 Hb_001944_020 Hb_012107_010--Hb_001944_020 Hb_002639_100 Hb_002639_100 Hb_012107_010--Hb_002639_100 Hb_001500_030 Hb_001500_030 Hb_012107_010--Hb_001500_030 Hb_003747_210 Hb_003747_210 Hb_012107_010--Hb_003747_210 Hb_002915_070 Hb_002915_070 Hb_000179_230--Hb_002915_070 Hb_000805_230 Hb_000805_230 Hb_000179_230--Hb_000805_230 Hb_004994_300 Hb_004994_300 Hb_000179_230--Hb_004994_300 Hb_103788_010 Hb_103788_010 Hb_000179_230--Hb_103788_010 Hb_000460_060 Hb_000460_060 Hb_000179_230--Hb_000460_060 Hb_002053_130--Hb_002639_100 Hb_005496_180 Hb_005496_180 Hb_002053_130--Hb_005496_180 Hb_002053_130--Hb_001944_020 Hb_000179_240 Hb_000179_240 Hb_002053_130--Hb_000179_240 Hb_171900_020 Hb_171900_020 Hb_002053_130--Hb_171900_020 Hb_048755_020 Hb_048755_020 Hb_001437_010--Hb_048755_020 Hb_007313_070 Hb_007313_070 Hb_001437_010--Hb_007313_070 Hb_000186_200 Hb_000186_200 Hb_001437_010--Hb_000186_200 Hb_002701_210 Hb_002701_210 Hb_001437_010--Hb_002701_210 Hb_000071_140 Hb_000071_140 Hb_001437_010--Hb_000071_140 Hb_004108_240 Hb_004108_240 Hb_001437_010--Hb_004108_240 Hb_000953_050 Hb_000953_050 Hb_028207_040--Hb_000953_050 Hb_001525_010 Hb_001525_010 Hb_028207_040--Hb_001525_010 Hb_003078_050 Hb_003078_050 Hb_028207_040--Hb_003078_050 Hb_003120_050 Hb_003120_050 Hb_028207_040--Hb_003120_050 Hb_001369_570 Hb_001369_570 Hb_028207_040--Hb_001369_570 Hb_000069_230 Hb_000069_230 Hb_028207_040--Hb_000069_230 Hb_000809_080 Hb_000809_080 Hb_001472_130--Hb_000809_080 Hb_000038_040 Hb_000038_040 Hb_001472_130--Hb_000038_040 Hb_001472_130--Hb_000805_230 Hb_006935_010 Hb_006935_010 Hb_001472_130--Hb_006935_010 Hb_000221_060 Hb_000221_060 Hb_001472_130--Hb_000221_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.8643 242.663 29.4275 77.1364 14.4903 12.0281
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.1646 44.1896 45.4138 13.1846 40.8153

CAGE analysis