Hb_002053_130

Information

Type -
Description -
Location Contig2053: 142725-149496
Sequence    

Annotation

kegg
ID rcu:RCOM_0771330
description UDP-glucose 4-epimerase, putative (EC:5.1.3.5)
nr
ID XP_002529901.1
description UDP-glucose 4-epimerase, putative [Ricinus communis]
swissprot
ID Q9SA77
description UDP-arabinose 4-epimerase 1 OS=Arabidopsis thaliana GN=MUR4 PE=1 SV=1
trembl
ID B9SV82
description UDP-glucose 4-epimerase, putative OS=Ricinus communis GN=RCOM_0771330 PE=3 SV=1
Gene Ontology
ID GO:0003978
description udp-arabinose 4-epimerase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21180: 142801-149366 , PASA_asmbl_21181: 142738-149366 , PASA_asmbl_21184: 143099-149366
cDNA
(Sanger)
(ID:Location)		 019_G20.ab1: 142801-146405

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002053_130 0.0 - - UDP-glucose 4-epimerase, putative [Ricinus communis]
2 Hb_012107_010 0.0760417463 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
3 Hb_002639_100 0.118774941 - - dehydrin [Hevea brasiliensis]
4 Hb_005496_180 0.1200914151 - - PREDICTED: U-box domain-containing protein 4-like [Jatropha curcas]
5 Hb_001944_020 0.1203925712 - - PREDICTED: uncharacterized protein LOC105636535 [Jatropha curcas]
6 Hb_000179_240 0.1247149066 - - PREDICTED: threonine synthase 1, chloroplastic [Jatropha curcas]
7 Hb_171900_020 0.125923614 - - PREDICTED: uncharacterized protein LOC105643207 [Jatropha curcas]
8 Hb_000186_200 0.1273756918 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
9 Hb_003747_210 0.1301609607 - - PREDICTED: uncharacterized protein LOC105630240 [Jatropha curcas]
10 Hb_002915_070 0.1305293249 - - PREDICTED: protein TRANSPARENT TESTA GLABRA 1 [Jatropha curcas]
11 Hb_001369_780 0.1310518792 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000205_240 0.1317312363 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_000805_230 0.1339093885 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
14 Hb_004774_020 0.134304949 - - PREDICTED: PRA1 family protein B4-like [Camelina sativa]
15 Hb_003925_040 0.1364919194 transcription factor TF Family: C2H2 PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 [Jatropha curcas]
16 Hb_001500_030 0.1370131403 - - PREDICTED: uncharacterized protein At2g33490 isoform X2 [Jatropha curcas]
17 Hb_004117_170 0.1372723157 - - PREDICTED: probable receptor-like protein kinase At3g55450 [Jatropha curcas]
18 Hb_006054_030 0.1383391684 - - PREDICTED: protein GPR107-like [Jatropha curcas]
19 Hb_000953_050 0.1421779033 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
20 Hb_000608_280 0.1429375907 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002053_130 Hb_002053_130 Hb_012107_010 Hb_012107_010 Hb_002053_130--Hb_012107_010 Hb_002639_100 Hb_002639_100 Hb_002053_130--Hb_002639_100 Hb_005496_180 Hb_005496_180 Hb_002053_130--Hb_005496_180 Hb_001944_020 Hb_001944_020 Hb_002053_130--Hb_001944_020 Hb_000179_240 Hb_000179_240 Hb_002053_130--Hb_000179_240 Hb_171900_020 Hb_171900_020 Hb_002053_130--Hb_171900_020 Hb_012107_010--Hb_001944_020 Hb_000417_420 Hb_000417_420 Hb_012107_010--Hb_000417_420 Hb_012107_010--Hb_002639_100 Hb_001500_030 Hb_001500_030 Hb_012107_010--Hb_001500_030 Hb_003747_210 Hb_003747_210 Hb_012107_010--Hb_003747_210 Hb_006935_010 Hb_006935_010 Hb_002639_100--Hb_006935_010 Hb_002572_050 Hb_002572_050 Hb_002639_100--Hb_002572_050 Hb_000038_040 Hb_000038_040 Hb_002639_100--Hb_000038_040 Hb_002639_100--Hb_003747_210 Hb_000953_050 Hb_000953_050 Hb_005496_180--Hb_000953_050 Hb_005496_180--Hb_002572_050 Hb_000805_230 Hb_000805_230 Hb_005496_180--Hb_000805_230 Hb_000120_160 Hb_000120_160 Hb_005496_180--Hb_000120_160 Hb_002915_070 Hb_002915_070 Hb_005496_180--Hb_002915_070 Hb_002701_220 Hb_002701_220 Hb_001944_020--Hb_002701_220 Hb_002217_090 Hb_002217_090 Hb_001944_020--Hb_002217_090 Hb_001944_020--Hb_003747_210 Hb_001944_020--Hb_001500_030 Hb_002685_200 Hb_002685_200 Hb_000179_240--Hb_002685_200 Hb_000186_200 Hb_000186_200 Hb_000179_240--Hb_000186_200 Hb_000084_240 Hb_000084_240 Hb_000179_240--Hb_000084_240 Hb_000925_030 Hb_000925_030 Hb_000179_240--Hb_000925_030 Hb_002205_010 Hb_002205_010 Hb_000179_240--Hb_002205_010 Hb_005146_080 Hb_005146_080 Hb_171900_020--Hb_005146_080 Hb_004117_170 Hb_004117_170 Hb_171900_020--Hb_004117_170 Hb_002042_170 Hb_002042_170 Hb_171900_020--Hb_002042_170 Hb_003925_040 Hb_003925_040 Hb_171900_020--Hb_003925_040 Hb_001235_170 Hb_001235_170 Hb_171900_020--Hb_001235_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.2151 63.791 19.2001 30.4014 7.22353 9.68628
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.51667 15.5451 16.452 11.7645 9.12873

CAGE analysis