Hb_002639_100

Information

Type -
Description -
Location Contig2639: 91780-93132
Sequence    

Annotation

kegg
ID cic:CICLE_v10002349mg
description hypothetical protein
nr
ID AJK30589.1
description dehydrin [Hevea brasiliensis]
swissprot
ID P31168
description Dehydrin COR47 OS=Arabidopsis thaliana GN=COR47 PE=1 SV=2
trembl
ID V9M4U6
description Dehydrin protein OS=Manihot esculenta GN=COR47 PE=2 SV=1
Gene Ontology
ID GO:0006950
description dehydrin

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27563: 91634-93069 , PASA_asmbl_27564: 91907-92866
cDNA
(Sanger)
(ID:Location)		 006_H06.ab1: 92635-98312 , 007_A02.ab1: 92066-92904 , 010_P16.ab1: 92353-92583 , 011_I11.ab1: 92353-92611 , 013_B04.ab1: 92287-92605 , 017_P06.ab1: 92635-92866 , 018_B17.ab1: 92289-92761 , 018_M06.ab1: 92287-92866 , 023_H14.ab1: 92125-92866 , 027_N11.ab1: 92001-92822 , 034_I13.ab1: 92355-92866 , 035_H22.ab1: 92287-92866 , 036_M04.ab1: 91992-92866 , 039_O08.ab1: 92491-92852 , 040_O04.ab1: 92355-92866 , 040_O19.ab1: 92635-98312 , 041_E16.ab1: 91998-92866 , 041_K03.ab1: 92320-92866 , 041_M02.ab1: 92208-92681 , 044_B24.ab1: 92004-92866 , 044_J05.ab1: 92290-92547 , 047_F20.ab1: 92287-92866 , 047_M20.ab1: 92004-92866 , 048_M09.ab1: 92010-92904 , 049_B18.ab1: 92355-92866 , 050_A22.ab1: 92287-92544

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002639_100 0.0 - - dehydrin [Hevea brasiliensis]
2 Hb_006935_010 0.1018764616 - - PREDICTED: inositol transporter 1 isoform X1 [Gossypium raimondii]
3 Hb_002053_130 0.118774941 - - UDP-glucose 4-epimerase, putative [Ricinus communis]
4 Hb_012107_010 0.1205606122 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
5 Hb_002572_050 0.1357312207 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
6 Hb_000038_040 0.1408837665 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
7 Hb_003747_210 0.1433031461 - - PREDICTED: uncharacterized protein LOC105630240 [Jatropha curcas]
8 Hb_000120_160 0.1451515947 - - unnamed protein product [Vitis vinifera]
9 Hb_103788_010 0.150160338 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
10 Hb_001944_020 0.1542875369 - - PREDICTED: uncharacterized protein LOC105636535 [Jatropha curcas]
11 Hb_171900_020 0.1551519714 - - PREDICTED: uncharacterized protein LOC105643207 [Jatropha curcas]
12 Hb_006846_020 0.1556545234 - - PREDICTED: uncharacterized protein LOC105648685 [Jatropha curcas]
13 Hb_005496_180 0.1567675209 - - PREDICTED: U-box domain-containing protein 4-like [Jatropha curcas]
14 Hb_000426_030 0.1608365552 - - PREDICTED: protein STICHEL-like 3 isoform X2 [Jatropha curcas]
15 Hb_004774_020 0.1619240564 - - PREDICTED: PRA1 family protein B4-like [Camelina sativa]
16 Hb_000069_780 0.1628335746 - - atpob1, putative [Ricinus communis]
17 Hb_001818_060 0.1629521134 - - PREDICTED: cysteine proteinase inhibitor 5-like [Jatropha curcas]
18 Hb_000503_010 0.1634173115 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b [Jatropha curcas]
19 Hb_018790_080 0.1638317336 - - hypothetical protein POPTR_0011s06335g [Populus trichocarpa]
20 Hb_000676_040 0.1650443091 - - hypothetical protein POPTR_0007s13320g [Populus trichocarpa]

Gene co-expression network

sample Hb_002639_100 Hb_002639_100 Hb_006935_010 Hb_006935_010 Hb_002639_100--Hb_006935_010 Hb_002053_130 Hb_002053_130 Hb_002639_100--Hb_002053_130 Hb_012107_010 Hb_012107_010 Hb_002639_100--Hb_012107_010 Hb_002572_050 Hb_002572_050 Hb_002639_100--Hb_002572_050 Hb_000038_040 Hb_000038_040 Hb_002639_100--Hb_000038_040 Hb_003747_210 Hb_003747_210 Hb_002639_100--Hb_003747_210 Hb_006935_010--Hb_000038_040 Hb_006846_020 Hb_006846_020 Hb_006935_010--Hb_006846_020 Hb_001049_160 Hb_001049_160 Hb_006935_010--Hb_001049_160 Hb_007382_100 Hb_007382_100 Hb_006935_010--Hb_007382_100 Hb_018790_080 Hb_018790_080 Hb_006935_010--Hb_018790_080 Hb_002053_130--Hb_012107_010 Hb_005496_180 Hb_005496_180 Hb_002053_130--Hb_005496_180 Hb_001944_020 Hb_001944_020 Hb_002053_130--Hb_001944_020 Hb_000179_240 Hb_000179_240 Hb_002053_130--Hb_000179_240 Hb_171900_020 Hb_171900_020 Hb_002053_130--Hb_171900_020 Hb_012107_010--Hb_001944_020 Hb_000417_420 Hb_000417_420 Hb_012107_010--Hb_000417_420 Hb_001500_030 Hb_001500_030 Hb_012107_010--Hb_001500_030 Hb_012107_010--Hb_003747_210 Hb_000953_050 Hb_000953_050 Hb_002572_050--Hb_000953_050 Hb_002572_050--Hb_005496_180 Hb_001369_570 Hb_001369_570 Hb_002572_050--Hb_001369_570 Hb_001794_060 Hb_001794_060 Hb_002572_050--Hb_001794_060 Hb_000215_350 Hb_000215_350 Hb_002572_050--Hb_000215_350 Hb_008511_100 Hb_008511_100 Hb_002572_050--Hb_008511_100 Hb_000038_040--Hb_006846_020 Hb_000107_440 Hb_000107_440 Hb_000038_040--Hb_000107_440 Hb_007007_080 Hb_007007_080 Hb_000038_040--Hb_007007_080 Hb_000776_050 Hb_000776_050 Hb_000038_040--Hb_000776_050 Hb_000038_040--Hb_007382_100 Hb_000110_300 Hb_000110_300 Hb_003747_210--Hb_000110_300 Hb_002217_090 Hb_002217_090 Hb_003747_210--Hb_002217_090 Hb_002915_060 Hb_002915_060 Hb_003747_210--Hb_002915_060 Hb_010661_010 Hb_010661_010 Hb_003747_210--Hb_010661_010 Hb_004128_030 Hb_004128_030 Hb_003747_210--Hb_004128_030 Hb_007576_200 Hb_007576_200 Hb_003747_210--Hb_007576_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
402.472 4368.14 981.894 1904.08 310.235 453.777
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
554.704 1357.05 478.445 1242.31 534.829

CAGE analysis