Hb_000107_440

Information

Type rubber biosynthesis
Description Gene Name: Hydroxymethylglutaryl coenzyme A synthase
Location Contig107: 316217-318396
Sequence    

Annotation

kegg
ID rcu:RCOM_1565000
description hmg-CoA reductase, putative (EC:1.1.1.34)
nr
ID BAF98281.1
description hydroxymethylglutaryl-CoA reductase [Hevea brasiliensis]
swissprot
ID O64966
description 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 OS=Gossypium hirsutum GN=HMG1 PE=3 SV=1
trembl
ID A9ZMZ9
description 3-hydroxy-3-methylglutaryl coenzyme A reductase OS=Hevea brasiliensis GN=HbHMGR PE=2 SV=1
Gene Ontology
ID GO:0016021
description 3-hydroxy-3-methylglutaryl-coenzyme a reductase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02191: 316131-318491
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_440 0.0 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A synthase hydroxymethylglutaryl-CoA reductase [Hevea brasiliensis]
2 Hb_000038_040 0.1201489996 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
3 Hb_000803_060 0.1223220079 - - poly(p)/ATP NAD kinase, putative [Ricinus communis]
4 Hb_006846_020 0.1257835136 - - PREDICTED: uncharacterized protein LOC105648685 [Jatropha curcas]
5 Hb_011716_050 0.1307873248 - - serine acetyltransferase [Hevea brasiliensis]
6 Hb_002477_120 0.1330404443 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
7 Hb_007007_080 0.1342714671 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006414_020 0.136987865 transcription factor TF Family: MYB -
9 Hb_002154_020 0.1415089974 - - protein with unknown function [Ricinus communis]
10 Hb_012787_040 0.1450235886 - - PREDICTED: uncharacterized protein LOC105649794 isoform X2 [Jatropha curcas]
11 Hb_000566_190 0.1478659122 - - unnamed protein product [Vitis vinifera]
12 Hb_000473_080 0.1492782076 - - PREDICTED: lipase-like PAD4 [Populus euphratica]
13 Hb_000840_070 0.1544189404 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
14 Hb_002471_140 0.1552511227 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
15 Hb_003752_120 0.1565410573 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
16 Hb_000221_060 0.1569699777 - - -
17 Hb_004466_070 0.1593175679 - - hypothetical protein RCOM_1447500 [Ricinus communis]
18 Hb_006935_010 0.159804729 - - PREDICTED: inositol transporter 1 isoform X1 [Gossypium raimondii]
19 Hb_000752_020 0.1601101134 - - PREDICTED: uncharacterized protein LOC105641803 isoform X1 [Jatropha curcas]
20 Hb_000103_400 0.160310067 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000107_440 Hb_000107_440 Hb_000038_040 Hb_000038_040 Hb_000107_440--Hb_000038_040 Hb_000803_060 Hb_000803_060 Hb_000107_440--Hb_000803_060 Hb_006846_020 Hb_006846_020 Hb_000107_440--Hb_006846_020 Hb_011716_050 Hb_011716_050 Hb_000107_440--Hb_011716_050 Hb_002477_120 Hb_002477_120 Hb_000107_440--Hb_002477_120 Hb_007007_080 Hb_007007_080 Hb_000107_440--Hb_007007_080 Hb_000038_040--Hb_006846_020 Hb_006935_010 Hb_006935_010 Hb_000038_040--Hb_006935_010 Hb_000038_040--Hb_007007_080 Hb_000776_050 Hb_000776_050 Hb_000038_040--Hb_000776_050 Hb_007382_100 Hb_007382_100 Hb_000038_040--Hb_007382_100 Hb_012787_040 Hb_012787_040 Hb_000803_060--Hb_012787_040 Hb_006414_020 Hb_006414_020 Hb_000803_060--Hb_006414_020 Hb_001258_150 Hb_001258_150 Hb_000803_060--Hb_001258_150 Hb_001489_120 Hb_001489_120 Hb_000803_060--Hb_001489_120 Hb_003752_120 Hb_003752_120 Hb_000803_060--Hb_003752_120 Hb_004032_310 Hb_004032_310 Hb_000803_060--Hb_004032_310 Hb_006846_020--Hb_002477_120 Hb_006846_020--Hb_007007_080 Hb_004208_140 Hb_004208_140 Hb_006846_020--Hb_004208_140 Hb_003207_100 Hb_003207_100 Hb_006846_020--Hb_003207_100 Hb_029622_020 Hb_029622_020 Hb_011716_050--Hb_029622_020 Hb_011716_050--Hb_006846_020 Hb_011716_050--Hb_000038_040 Hb_011716_050--Hb_006935_010 Hb_001959_120 Hb_001959_120 Hb_011716_050--Hb_001959_120 Hb_008667_060 Hb_008667_060 Hb_002477_120--Hb_008667_060 Hb_002154_020 Hb_002154_020 Hb_002477_120--Hb_002154_020 Hb_000802_190 Hb_000802_190 Hb_002477_120--Hb_000802_190 Hb_002477_120--Hb_007007_080 Hb_002477_120--Hb_004032_310 Hb_002471_140 Hb_002471_140 Hb_002477_120--Hb_002471_140 Hb_000069_330 Hb_000069_330 Hb_007007_080--Hb_000069_330 Hb_003224_030 Hb_003224_030 Hb_007007_080--Hb_003224_030 Hb_007007_080--Hb_003752_120 Hb_005496_160 Hb_005496_160 Hb_007007_080--Hb_005496_160 Hb_007007_080--Hb_002154_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.8851 128.778 37.4637 28.1134 2.78637 8.15824
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.99489 7.79957 9.40666 39.038 11.7883

CAGE analysis