Hb_001959_120

Information

Type -
Description -
Location Contig1959: 113058-114891
Sequence    

Annotation

kegg
ID pop:POPTR_0004s02730g
description POPTRDRAFT_758536; hypothetical protein
nr
ID XP_012077686.1
description PREDICTED: uncharacterized protein LOC105638487 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KED1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12897 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19631: 111803-112592 , PASA_asmbl_19633: 114235-115024
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001959_120 0.0 - - PREDICTED: uncharacterized protein LOC105638487 [Jatropha curcas]
2 Hb_000120_160 0.1489236863 - - unnamed protein product [Vitis vinifera]
3 Hb_001486_200 0.1529164529 - - PREDICTED: uncharacterized protein LOC105632606 [Jatropha curcas]
4 Hb_000672_150 0.1559061049 - - Patatin T5 precursor, putative [Ricinus communis]
5 Hb_000084_220 0.1571871509 - - PREDICTED: uncharacterized protein LOC105634692 [Jatropha curcas]
6 Hb_011716_050 0.1625954056 - - serine acetyltransferase [Hevea brasiliensis]
7 Hb_002876_250 0.1630356715 - - PREDICTED: receptor-like protein kinase 2 [Jatropha curcas]
8 Hb_001049_160 0.1669063888 - - aldose 1-epimerase, putative [Ricinus communis]
9 Hb_000038_040 0.1698223833 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
10 Hb_006846_020 0.1701391981 - - PREDICTED: uncharacterized protein LOC105648685 [Jatropha curcas]
11 Hb_001616_110 0.1705683007 - - PREDICTED: RPM1-interacting protein 4 [Jatropha curcas]
12 Hb_000699_230 0.1716741244 - - Ankyrin repeat family protein, putative [Theobroma cacao]
13 Hb_004208_140 0.1737065379 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
14 Hb_025708_020 0.1745315859 - - receptor protein kinase, putative [Ricinus communis]
15 Hb_002639_100 0.1761224612 - - dehydrin [Hevea brasiliensis]
16 Hb_007007_070 0.1781481709 transcription factor TF Family: TCP hypothetical protein MIMGU_mgv1a022855mg, partial [Erythranthe guttata]
17 Hb_000116_210 0.1808985559 - - PREDICTED: uncharacterized protein LOC105628567 [Jatropha curcas]
18 Hb_000110_300 0.1830879171 - - PREDICTED: uncharacterized protein LOC105642013 [Jatropha curcas]
19 Hb_006935_010 0.1831384985 - - PREDICTED: inositol transporter 1 isoform X1 [Gossypium raimondii]
20 Hb_000671_170 0.1837637364 - - kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001959_120 Hb_001959_120 Hb_000120_160 Hb_000120_160 Hb_001959_120--Hb_000120_160 Hb_001486_200 Hb_001486_200 Hb_001959_120--Hb_001486_200 Hb_000672_150 Hb_000672_150 Hb_001959_120--Hb_000672_150 Hb_000084_220 Hb_000084_220 Hb_001959_120--Hb_000084_220 Hb_011716_050 Hb_011716_050 Hb_001959_120--Hb_011716_050 Hb_002876_250 Hb_002876_250 Hb_001959_120--Hb_002876_250 Hb_000805_230 Hb_000805_230 Hb_000120_160--Hb_000805_230 Hb_000120_160--Hb_002876_250 Hb_000116_210 Hb_000116_210 Hb_000120_160--Hb_000116_210 Hb_005496_180 Hb_005496_180 Hb_000120_160--Hb_005496_180 Hb_001288_070 Hb_001288_070 Hb_000120_160--Hb_001288_070 Hb_002154_020 Hb_002154_020 Hb_000120_160--Hb_002154_020 Hb_000059_300 Hb_000059_300 Hb_001486_200--Hb_000059_300 Hb_000110_300 Hb_000110_300 Hb_001486_200--Hb_000110_300 Hb_001049_160 Hb_001049_160 Hb_001486_200--Hb_001049_160 Hb_001486_200--Hb_002876_250 Hb_014720_050 Hb_014720_050 Hb_001486_200--Hb_014720_050 Hb_128589_010 Hb_128589_010 Hb_001486_200--Hb_128589_010 Hb_001113_030 Hb_001113_030 Hb_000672_150--Hb_001113_030 Hb_168707_040 Hb_168707_040 Hb_000672_150--Hb_168707_040 Hb_001472_130 Hb_001472_130 Hb_000672_150--Hb_001472_130 Hb_000671_170 Hb_000671_170 Hb_000672_150--Hb_000671_170 Hb_008173_030 Hb_008173_030 Hb_000672_150--Hb_008173_030 Hb_000084_220--Hb_128589_010 Hb_002471_140 Hb_002471_140 Hb_000084_220--Hb_002471_140 Hb_000205_250 Hb_000205_250 Hb_000084_220--Hb_000205_250 Hb_000805_190 Hb_000805_190 Hb_000084_220--Hb_000805_190 Hb_009646_010 Hb_009646_010 Hb_000084_220--Hb_009646_010 Hb_000009_140 Hb_000009_140 Hb_000084_220--Hb_000009_140 Hb_000107_440 Hb_000107_440 Hb_011716_050--Hb_000107_440 Hb_029622_020 Hb_029622_020 Hb_011716_050--Hb_029622_020 Hb_006846_020 Hb_006846_020 Hb_011716_050--Hb_006846_020 Hb_000038_040 Hb_000038_040 Hb_011716_050--Hb_000038_040 Hb_006935_010 Hb_006935_010 Hb_011716_050--Hb_006935_010 Hb_002876_250--Hb_000116_210 Hb_000207_290 Hb_000207_290 Hb_002876_250--Hb_000207_290 Hb_002876_250--Hb_000805_230 Hb_000836_600 Hb_000836_600 Hb_002876_250--Hb_000836_600 Hb_002876_250--Hb_000805_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.088684 1.3713 0.336833 0.482667 0 0.0551141
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.191046 0.375658 0.346781 0.558331 0.308425

CAGE analysis