Hb_001472_130

Information

Type -
Description -
Location Contig1472: 203781-206707
Sequence    

Annotation

kegg
ID rcu:RCOM_1687100
description hypothetical protein
nr
ID XP_012086872.1
description PREDICTED: uncharacterized protein LOC105645786 [Jatropha curcas]
swissprot
ID Q9SRE5
description Uncharacterized protein At1g76660 OS=Arabidopsis thaliana GN=At1g76660 PE=2 SV=1
trembl
ID A0A067JZI1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20571 PE=4 SV=1
Gene Ontology
ID GO:0006950
description hydroxyproline-rich glycoprotein family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001472_130 0.0 - - PREDICTED: uncharacterized protein LOC105645786 [Jatropha curcas]
2 Hb_000809_080 0.1372781672 - - 50S ribosomal protein L25, putative [Ricinus communis]
3 Hb_000038_040 0.1553030268 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
4 Hb_000805_230 0.158606412 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
5 Hb_006935_010 0.1623911076 - - PREDICTED: inositol transporter 1 isoform X1 [Gossypium raimondii]
6 Hb_000221_060 0.1627198288 - - -
7 Hb_000417_420 0.1629370589 - - PREDICTED: U-box domain-containing protein 17 [Jatropha curcas]
8 Hb_005496_180 0.1666510999 - - PREDICTED: U-box domain-containing protein 4-like [Jatropha curcas]
9 Hb_006846_020 0.1671303443 - - PREDICTED: uncharacterized protein LOC105648685 [Jatropha curcas]
10 Hb_000345_500 0.1684445432 - - PREDICTED: peroxisomal adenine nucleotide carrier 1 [Jatropha curcas]
11 Hb_002639_100 0.1685732604 - - dehydrin [Hevea brasiliensis]
12 Hb_007007_070 0.1709382658 transcription factor TF Family: TCP hypothetical protein MIMGU_mgv1a022855mg, partial [Erythranthe guttata]
13 Hb_002205_010 0.1736365779 - - hypothetical protein JCGZ_03337 [Jatropha curcas]
14 Hb_000809_090 0.1745378713 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA isoform X1 [Jatropha curcas]
15 Hb_000107_440 0.1749350144 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A synthase hydroxymethylglutaryl-CoA reductase [Hevea brasiliensis]
16 Hb_000152_860 0.1761460657 - - receptor protein kinase, putative [Ricinus communis]
17 Hb_002915_070 0.1770449485 - - PREDICTED: protein TRANSPARENT TESTA GLABRA 1 [Jatropha curcas]
18 Hb_002053_130 0.1793396205 - - UDP-glucose 4-epimerase, putative [Ricinus communis]
19 Hb_000672_150 0.1796974664 - - Patatin T5 precursor, putative [Ricinus communis]
20 Hb_000120_160 0.1801978739 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_001472_130 Hb_001472_130 Hb_000809_080 Hb_000809_080 Hb_001472_130--Hb_000809_080 Hb_000038_040 Hb_000038_040 Hb_001472_130--Hb_000038_040 Hb_000805_230 Hb_000805_230 Hb_001472_130--Hb_000805_230 Hb_006935_010 Hb_006935_010 Hb_001472_130--Hb_006935_010 Hb_000221_060 Hb_000221_060 Hb_001472_130--Hb_000221_060 Hb_000417_420 Hb_000417_420 Hb_001472_130--Hb_000417_420 Hb_000809_080--Hb_000221_060 Hb_002918_150 Hb_002918_150 Hb_000809_080--Hb_002918_150 Hb_000809_080--Hb_006935_010 Hb_000803_060 Hb_000803_060 Hb_000809_080--Hb_000803_060 Hb_000103_400 Hb_000103_400 Hb_000809_080--Hb_000103_400 Hb_006846_020 Hb_006846_020 Hb_000038_040--Hb_006846_020 Hb_000038_040--Hb_006935_010 Hb_000107_440 Hb_000107_440 Hb_000038_040--Hb_000107_440 Hb_007007_080 Hb_007007_080 Hb_000038_040--Hb_007007_080 Hb_000776_050 Hb_000776_050 Hb_000038_040--Hb_000776_050 Hb_007382_100 Hb_007382_100 Hb_000038_040--Hb_007382_100 Hb_002915_070 Hb_002915_070 Hb_000805_230--Hb_002915_070 Hb_000179_230 Hb_000179_230 Hb_000805_230--Hb_000179_230 Hb_000120_160 Hb_000120_160 Hb_000805_230--Hb_000120_160 Hb_000116_210 Hb_000116_210 Hb_000805_230--Hb_000116_210 Hb_004032_310 Hb_004032_310 Hb_000805_230--Hb_004032_310 Hb_000448_060 Hb_000448_060 Hb_000805_230--Hb_000448_060 Hb_002639_100 Hb_002639_100 Hb_006935_010--Hb_002639_100 Hb_006935_010--Hb_006846_020 Hb_001049_160 Hb_001049_160 Hb_006935_010--Hb_001049_160 Hb_006935_010--Hb_007382_100 Hb_018790_080 Hb_018790_080 Hb_006935_010--Hb_018790_080 Hb_000221_060--Hb_000803_060 Hb_001489_120 Hb_001489_120 Hb_000221_060--Hb_001489_120 Hb_012787_040 Hb_012787_040 Hb_000221_060--Hb_012787_040 Hb_000071_140 Hb_000071_140 Hb_000221_060--Hb_000071_140 Hb_006414_020 Hb_006414_020 Hb_000221_060--Hb_006414_020 Hb_000221_060--Hb_000103_400 Hb_012107_010 Hb_012107_010 Hb_000417_420--Hb_012107_010 Hb_000417_420--Hb_000179_230 Hb_002053_130 Hb_002053_130 Hb_000417_420--Hb_002053_130 Hb_001437_010 Hb_001437_010 Hb_000417_420--Hb_001437_010 Hb_028207_040 Hb_028207_040 Hb_000417_420--Hb_028207_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.808726 34.8829 6.13811 6.28638 1.66778 1.11605
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.55483 5.69527 4.86266 5.16438 2.37822

CAGE analysis