Hb_002918_150

Information

Type transcription factor
Description TF Family: ERF
Location Contig2918: 143616-144347
Sequence    

Annotation

kegg
ID rcu:RCOM_1673760
description Ethylene-responsive transcription factor, putative
nr
ID AEK82608.1
description ethylene-responsive element binding protein 1 [Hevea brasiliensis]
swissprot
ID Q9LW49
description Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1
trembl
ID G3CU72
description Ethylene-responsive element binding protein 1 OS=Hevea brasiliensis GN=EREBP1 PE=2 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30608: 143335-144424
cDNA
(Sanger)
(ID:Location)		 037_D19.ab1: 143657-144422 , 052_B13.ab1: 143634-144422

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002918_150 0.0 transcription factor TF Family: ERF ethylene-responsive element binding protein 1 [Hevea brasiliensis]
2 Hb_048653_020 0.1271060123 - - ankyrin repeat-containing protein, putative [Ricinus communis]
3 Hb_011120_020 0.1525245757 - - PREDICTED: casein kinase I-like isoform X1 [Jatropha curcas]
4 Hb_000809_080 0.1557500629 - - 50S ribosomal protein L25, putative [Ricinus communis]
5 Hb_000220_090 0.1561600581 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Jatropha curcas]
6 Hb_138575_010 0.1630124947 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
7 Hb_009838_060 0.1657423417 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005656_140 0.1715664476 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 9 [Jatropha curcas]
9 Hb_000997_110 0.1719749322 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
10 Hb_003494_060 0.1735559778 - - PREDICTED: uncharacterized protein LOC105644062 isoform X1 [Jatropha curcas]
11 Hb_000015_180 0.1744621985 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
12 Hb_185513_010 0.1769717517 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000270_770 0.1799405644 - - PREDICTED: uncharacterized protein LOC105640410 [Jatropha curcas]
14 Hb_103788_010 0.1800525126 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
15 Hb_001472_130 0.1826140433 - - PREDICTED: uncharacterized protein LOC105645786 [Jatropha curcas]
16 Hb_000803_060 0.1844047941 - - poly(p)/ATP NAD kinase, putative [Ricinus communis]
17 Hb_007379_020 0.1848365318 - - hypothetical protein JCGZ_25958 [Jatropha curcas]
18 Hb_002686_400 0.185785995 - - hypothetical protein POPTR_0019s04500g [Populus trichocarpa]
19 Hb_002760_040 0.1870004081 - - PREDICTED: uncharacterized protein LOC105641234 [Jatropha curcas]
20 Hb_001377_500 0.1895227375 - - DOF AFFECTING GERMINATION 2 family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_002918_150 Hb_002918_150 Hb_048653_020 Hb_048653_020 Hb_002918_150--Hb_048653_020 Hb_011120_020 Hb_011120_020 Hb_002918_150--Hb_011120_020 Hb_000809_080 Hb_000809_080 Hb_002918_150--Hb_000809_080 Hb_000220_090 Hb_000220_090 Hb_002918_150--Hb_000220_090 Hb_138575_010 Hb_138575_010 Hb_002918_150--Hb_138575_010 Hb_009838_060 Hb_009838_060 Hb_002918_150--Hb_009838_060 Hb_048653_020--Hb_138575_010 Hb_013057_030 Hb_013057_030 Hb_048653_020--Hb_013057_030 Hb_002217_440 Hb_002217_440 Hb_048653_020--Hb_002217_440 Hb_003086_050 Hb_003086_050 Hb_048653_020--Hb_003086_050 Hb_002272_140 Hb_002272_140 Hb_048653_020--Hb_002272_140 Hb_000015_180 Hb_000015_180 Hb_011120_020--Hb_000015_180 Hb_000003_430 Hb_000003_430 Hb_011120_020--Hb_000003_430 Hb_011416_020 Hb_011416_020 Hb_011120_020--Hb_011416_020 Hb_002835_260 Hb_002835_260 Hb_011120_020--Hb_002835_260 Hb_011120_020--Hb_000220_090 Hb_001472_130 Hb_001472_130 Hb_000809_080--Hb_001472_130 Hb_000221_060 Hb_000221_060 Hb_000809_080--Hb_000221_060 Hb_006935_010 Hb_006935_010 Hb_000809_080--Hb_006935_010 Hb_000803_060 Hb_000803_060 Hb_000809_080--Hb_000803_060 Hb_000103_400 Hb_000103_400 Hb_000809_080--Hb_000103_400 Hb_000220_090--Hb_000015_180 Hb_003038_010 Hb_003038_010 Hb_000220_090--Hb_003038_010 Hb_056012_010 Hb_056012_010 Hb_000220_090--Hb_056012_010 Hb_000220_090--Hb_000803_060 Hb_102100_010 Hb_102100_010 Hb_000220_090--Hb_102100_010 Hb_000434_050 Hb_000434_050 Hb_000220_090--Hb_000434_050 Hb_138575_010--Hb_102100_010 Hb_009897_020 Hb_009897_020 Hb_138575_010--Hb_009897_020 Hb_116635_010 Hb_116635_010 Hb_138575_010--Hb_116635_010 Hb_138575_010--Hb_000015_180 Hb_001504_270 Hb_001504_270 Hb_138575_010--Hb_001504_270 Hb_003494_060 Hb_003494_060 Hb_009838_060--Hb_003494_060 Hb_001141_360 Hb_001141_360 Hb_009838_060--Hb_001141_360 Hb_012760_010 Hb_012760_010 Hb_009838_060--Hb_012760_010 Hb_005656_140 Hb_005656_140 Hb_009838_060--Hb_005656_140 Hb_001546_110 Hb_001546_110 Hb_009838_060--Hb_001546_110 Hb_185513_010 Hb_185513_010 Hb_009838_060--Hb_185513_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.4227 424.679 25.7491 97.0558 27.3862 15.8502
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.4393 35.2833 24.9852 74.0488 7.25336

CAGE analysis