Hb_000003_430

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig3: 264450-271565
Sequence    

Annotation

kegg
ID pop:POPTR_0001s06650g
description POPTRDRAFT_178418; hypothetical protein
nr
ID XP_012091750.1
description PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID A0A067JM58
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21556 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_430 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
2 Hb_111881_030 0.1230045937 - - PREDICTED: uncharacterized protein LOC105645255 [Jatropha curcas]
3 Hb_001956_190 0.1301688644 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
4 Hb_000270_770 0.1305163243 - - PREDICTED: uncharacterized protein LOC105640410 [Jatropha curcas]
5 Hb_011120_020 0.1421771853 - - PREDICTED: casein kinase I-like isoform X1 [Jatropha curcas]
6 Hb_187697_010 0.1501707702 - - TMV resistance protein N, putative [Ricinus communis]
7 Hb_011416_020 0.1605707583 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003913_030 0.1850215074 - - PREDICTED: uncharacterized protein LOC105640313 [Jatropha curcas]
9 Hb_012760_060 0.1896560716 - - PREDICTED: uncharacterized protein LOC105647085 isoform X1 [Jatropha curcas]
10 Hb_000015_180 0.1920300665 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
11 Hb_000506_130 0.1920796794 - - DGCR14-related family protein [Populus trichocarpa]
12 Hb_002918_150 0.1929215911 transcription factor TF Family: ERF ethylene-responsive element binding protein 1 [Hevea brasiliensis]
13 Hb_002835_260 0.1965197802 - - PREDICTED: uncharacterized protein LOC105640313 [Jatropha curcas]
14 Hb_000003_760 0.199690089 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA26-like [Jatropha curcas]
15 Hb_008725_190 0.2015768859 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 5-like [Jatropha curcas]
16 Hb_000220_090 0.2046954909 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Jatropha curcas]
17 Hb_052113_020 0.2084713023 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
18 Hb_003637_020 0.2110259066 - - conserved hypothetical protein [Ricinus communis]
19 Hb_123885_010 0.2119268287 - - Disease resistance protein RPS5, putative [Ricinus communis]
20 Hb_185513_010 0.2134493239 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000003_430 Hb_000003_430 Hb_111881_030 Hb_111881_030 Hb_000003_430--Hb_111881_030 Hb_001956_190 Hb_001956_190 Hb_000003_430--Hb_001956_190 Hb_000270_770 Hb_000270_770 Hb_000003_430--Hb_000270_770 Hb_011120_020 Hb_011120_020 Hb_000003_430--Hb_011120_020 Hb_187697_010 Hb_187697_010 Hb_000003_430--Hb_187697_010 Hb_011416_020 Hb_011416_020 Hb_000003_430--Hb_011416_020 Hb_111881_030--Hb_001956_190 Hb_000003_760 Hb_000003_760 Hb_111881_030--Hb_000003_760 Hb_000506_130 Hb_000506_130 Hb_111881_030--Hb_000506_130 Hb_052113_020 Hb_052113_020 Hb_111881_030--Hb_052113_020 Hb_008725_190 Hb_008725_190 Hb_111881_030--Hb_008725_190 Hb_001956_190--Hb_000506_130 Hb_001956_190--Hb_000270_770 Hb_000336_190 Hb_000336_190 Hb_001956_190--Hb_000336_190 Hb_001956_190--Hb_000003_760 Hb_103788_010 Hb_103788_010 Hb_000270_770--Hb_103788_010 Hb_185513_010 Hb_185513_010 Hb_000270_770--Hb_185513_010 Hb_006711_070 Hb_006711_070 Hb_000270_770--Hb_006711_070 Hb_003637_020 Hb_003637_020 Hb_000270_770--Hb_003637_020 Hb_000015_180 Hb_000015_180 Hb_011120_020--Hb_000015_180 Hb_011120_020--Hb_011416_020 Hb_002835_260 Hb_002835_260 Hb_011120_020--Hb_002835_260 Hb_002918_150 Hb_002918_150 Hb_011120_020--Hb_002918_150 Hb_000220_090 Hb_000220_090 Hb_011120_020--Hb_000220_090 Hb_000029_280 Hb_000029_280 Hb_187697_010--Hb_000029_280 Hb_187697_010--Hb_000506_130 Hb_127628_010 Hb_127628_010 Hb_187697_010--Hb_127628_010 Hb_187697_010--Hb_008725_190 Hb_003913_030 Hb_003913_030 Hb_187697_010--Hb_003913_030 Hb_011416_020--Hb_002835_260 Hb_000142_010 Hb_000142_010 Hb_011416_020--Hb_000142_010 Hb_011416_020--Hb_001956_190 Hb_011416_020--Hb_000506_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.216521 2.49393 0.0843707 1.19724 0.130782 0.121961
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.115124 0.16106 0.0578757 0.131668 0.0215212

CAGE analysis