Hb_000142_010

Information

Type -
Description -
Location Contig142: 4671-5006
Sequence    

Annotation

kegg
ID pop:POPTR_0001s41500g
description hypothetical protein
nr
ID XP_012070613.1
description PREDICTED: uncharacterized protein LOC105632779 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KRZ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00664 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000142_010 0.0 - - PREDICTED: uncharacterized protein LOC105632779 [Jatropha curcas]
2 Hb_174829_040 0.08297079 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
3 Hb_002042_190 0.1029468824 - - PREDICTED: E3 ubiquitin-protein ligase ATL6-like [Jatropha curcas]
4 Hb_116349_050 0.1252537419 - - formin homology 2 domain-containing family protein [Populus trichocarpa]
5 Hb_002311_490 0.1317100904 - - PREDICTED: RING-H2 finger protein ATL2 [Jatropha curcas]
6 Hb_011416_020 0.1353670182 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003053_060 0.1366281251 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
8 Hb_000210_150 0.1386642162 - - PREDICTED: protein YLS9-like [Jatropha curcas]
9 Hb_158123_010 0.1433274796 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
10 Hb_075449_030 0.1493414226 - - PREDICTED: two-pore potassium channel 1 [Jatropha curcas]
11 Hb_000336_160 0.1500130703 - - ATP binding protein, putative [Ricinus communis]
12 Hb_000172_300 0.1502846947 - - PREDICTED: L-ascorbate oxidase-like [Jatropha curcas]
13 Hb_000414_100 0.1507297062 - - PREDICTED: uncharacterized protein LOC105643784 [Jatropha curcas]
14 Hb_047833_010 0.1539319883 - - Avr9/Cf-9 rapidly elicited protein [Jatropha curcas]
15 Hb_000506_140 0.1551167445 - - hypothetical protein PRUPE_ppb019425mg [Prunus persica]
16 Hb_002835_260 0.1554593945 - - PREDICTED: uncharacterized protein LOC105640313 [Jatropha curcas]
17 Hb_011805_060 0.1580792367 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
18 Hb_000181_080 0.1652644859 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
19 Hb_000610_030 0.1676766782 - - hypothetical protein MIMGU_mgv1a0038491mg, partial [Erythranthe guttata]
20 Hb_000316_150 0.1698484005 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000142_010 Hb_000142_010 Hb_174829_040 Hb_174829_040 Hb_000142_010--Hb_174829_040 Hb_002042_190 Hb_002042_190 Hb_000142_010--Hb_002042_190 Hb_116349_050 Hb_116349_050 Hb_000142_010--Hb_116349_050 Hb_002311_490 Hb_002311_490 Hb_000142_010--Hb_002311_490 Hb_011416_020 Hb_011416_020 Hb_000142_010--Hb_011416_020 Hb_003053_060 Hb_003053_060 Hb_000142_010--Hb_003053_060 Hb_174829_040--Hb_002042_190 Hb_174829_040--Hb_116349_050 Hb_174829_040--Hb_002311_490 Hb_000172_300 Hb_000172_300 Hb_174829_040--Hb_000172_300 Hb_000414_100 Hb_000414_100 Hb_174829_040--Hb_000414_100 Hb_002042_190--Hb_000172_300 Hb_002042_190--Hb_116349_050 Hb_052113_020 Hb_052113_020 Hb_002042_190--Hb_052113_020 Hb_000210_150 Hb_000210_150 Hb_002042_190--Hb_000210_150 Hb_116349_050--Hb_000172_300 Hb_116349_050--Hb_000414_100 Hb_048653_040 Hb_048653_040 Hb_116349_050--Hb_048653_040 Hb_000039_100 Hb_000039_100 Hb_116349_050--Hb_000039_100 Hb_000506_140 Hb_000506_140 Hb_002311_490--Hb_000506_140 Hb_000563_460 Hb_000563_460 Hb_002311_490--Hb_000563_460 Hb_158123_010 Hb_158123_010 Hb_002311_490--Hb_158123_010 Hb_000465_330 Hb_000465_330 Hb_002311_490--Hb_000465_330 Hb_035391_010 Hb_035391_010 Hb_002311_490--Hb_035391_010 Hb_002835_260 Hb_002835_260 Hb_011416_020--Hb_002835_260 Hb_011120_020 Hb_011120_020 Hb_011416_020--Hb_011120_020 Hb_000003_430 Hb_000003_430 Hb_011416_020--Hb_000003_430 Hb_001956_190 Hb_001956_190 Hb_011416_020--Hb_001956_190 Hb_000506_130 Hb_000506_130 Hb_011416_020--Hb_000506_130 Hb_015978_030 Hb_015978_030 Hb_003053_060--Hb_015978_030 Hb_003053_060--Hb_174829_040 Hb_004324_290 Hb_004324_290 Hb_003053_060--Hb_004324_290 Hb_003053_060--Hb_002835_260 Hb_136886_010 Hb_136886_010 Hb_003053_060--Hb_136886_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.4833 453.6 14.5238 78.4368 3.82076 1.45261
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.8627 15.2872 4.38666 13.455 5.15759

CAGE analysis