Hb_000506_130

Information

Type -
Description -
Location Contig506: 161857-162540
Sequence    

Annotation

kegg
ID pop:POPTR_0002s22150g
description POPTRDRAFT_552692; DGCR14-related family protein
nr
ID XP_002301584.1
description DGCR14-related family protein [Populus trichocarpa]
swissprot
ID Q96DF8
description Protein DGCR14 OS=Homo sapiens GN=DGCR14 PE=1 SV=1
trembl
ID B9GTG5
description DGCR14-related family protein OS=Populus trichocarpa GN=POPTR_0002s22150g PE=4 SV=1
Gene Ontology
ID GO:0042732
description protein dgcr14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000506_130 0.0 - - DGCR14-related family protein [Populus trichocarpa]
2 Hb_000245_270 0.0952104476 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
3 Hb_000506_140 0.1149664996 - - hypothetical protein PRUPE_ppb019425mg [Prunus persica]
4 Hb_052113_020 0.1166468856 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
5 Hb_017434_020 0.1189110994 transcription factor TF Family: C2H2 Zinc finger protein 4 [Populus trichocarpa]
6 Hb_029238_020 0.12041135 - - PREDICTED: expansin-like A1 [Jatropha curcas]
7 Hb_004143_050 0.1204331676 - - PREDICTED: uncharacterized protein LOC105630712 [Jatropha curcas]
8 Hb_000087_180 0.1266312034 - - conserved hypothetical protein [Ricinus communis]
9 Hb_116349_090 0.132490109 - - PREDICTED: probable galacturonosyltransferase-like 9 [Jatropha curcas]
10 Hb_000805_150 0.1336421153 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]
11 Hb_001956_190 0.134188176 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
12 Hb_004968_050 0.1389896122 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
13 Hb_000796_200 0.1421284754 - - PREDICTED: probable glycerol-3-phosphate acyltransferase 3 [Jatropha curcas]
14 Hb_125884_010 0.1441464776 - - PREDICTED: metalloendoproteinase 1-like [Jatropha curcas]
15 Hb_000336_190 0.1445120305 - - PREDICTED: UPF0481 protein At3g47200-like [Gossypium raimondii]
16 Hb_010142_040 0.1477578917 - - PREDICTED: classical arabinogalactan protein 4-like [Jatropha curcas]
17 Hb_032920_040 0.1481071074 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s30260g [Populus trichocarpa]
18 Hb_111881_030 0.1517504682 - - PREDICTED: uncharacterized protein LOC105645255 [Jatropha curcas]
19 Hb_012760_060 0.1529987679 - - PREDICTED: uncharacterized protein LOC105647085 isoform X1 [Jatropha curcas]
20 Hb_078901_010 0.1543648115 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]

Gene co-expression network

sample Hb_000506_130 Hb_000506_130 Hb_000245_270 Hb_000245_270 Hb_000506_130--Hb_000245_270 Hb_000506_140 Hb_000506_140 Hb_000506_130--Hb_000506_140 Hb_052113_020 Hb_052113_020 Hb_000506_130--Hb_052113_020 Hb_017434_020 Hb_017434_020 Hb_000506_130--Hb_017434_020 Hb_029238_020 Hb_029238_020 Hb_000506_130--Hb_029238_020 Hb_004143_050 Hb_004143_050 Hb_000506_130--Hb_004143_050 Hb_000805_150 Hb_000805_150 Hb_000245_270--Hb_000805_150 Hb_000245_270--Hb_029238_020 Hb_116349_090 Hb_116349_090 Hb_000245_270--Hb_116349_090 Hb_000245_270--Hb_004143_050 Hb_078901_010 Hb_078901_010 Hb_000245_270--Hb_078901_010 Hb_000796_200 Hb_000796_200 Hb_000506_140--Hb_000796_200 Hb_002311_490 Hb_002311_490 Hb_000506_140--Hb_002311_490 Hb_016404_010 Hb_016404_010 Hb_000506_140--Hb_016404_010 Hb_000465_330 Hb_000465_330 Hb_000506_140--Hb_000465_330 Hb_000506_140--Hb_116349_090 Hb_052113_020--Hb_000245_270 Hb_002042_190 Hb_002042_190 Hb_052113_020--Hb_002042_190 Hb_003800_010 Hb_003800_010 Hb_052113_020--Hb_003800_010 Hb_052113_020--Hb_029238_020 Hb_052113_020--Hb_004143_050 Hb_000087_180 Hb_000087_180 Hb_017434_020--Hb_000087_180 Hb_183539_010 Hb_183539_010 Hb_017434_020--Hb_183539_010 Hb_017434_020--Hb_000506_140 Hb_005183_010 Hb_005183_010 Hb_017434_020--Hb_005183_010 Hb_004607_180 Hb_004607_180 Hb_017434_020--Hb_004607_180 Hb_029238_020--Hb_116349_090 Hb_029238_020--Hb_000805_150 Hb_001511_270 Hb_001511_270 Hb_029238_020--Hb_001511_270 Hb_002234_200 Hb_002234_200 Hb_029238_020--Hb_002234_200 Hb_000742_260 Hb_000742_260 Hb_004143_050--Hb_000742_260 Hb_019026_030 Hb_019026_030 Hb_004143_050--Hb_019026_030 Hb_004143_050--Hb_003800_010 Hb_004143_050--Hb_029238_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.8325 639.625 71.2828 271.379 12.0878 18.1223
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.3646 13.9919 12.0406 19.0229 36.1421

CAGE analysis