Hb_078901_010

Information

Type -
Description -
Location Contig78901: 5093-8306
Sequence    

Annotation

kegg
ID pop:POPTR_0016s12810g
description POPTRDRAFT_257853; hypothetical protein
nr
ID XP_012089810.1
description PREDICTED: receptor-like protein 12 [Jatropha curcas]
swissprot
ID Q9C9H7
description Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2
trembl
ID A0A067JS79
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00447 PE=4 SV=1
Gene Ontology
ID GO:0016491
description receptor-like protein 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58244: 6988-7326
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_078901_010 0.0 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
2 Hb_000805_150 0.0972525016 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]
3 Hb_000434_050 0.1051315107 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
4 Hb_009476_010 0.1110597126 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
5 Hb_000245_270 0.1131403329 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
6 Hb_000172_080 0.1177727918 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]
7 Hb_000373_250 0.1181202021 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
8 Hb_010589_130 0.1201483968 - - PREDICTED: uncharacterized protein LOC104884346 [Beta vulgaris subsp. vulgaris]
9 Hb_185080_010 0.1212473755 - - -
10 Hb_007120_010 0.1291480843 - - PREDICTED: uncharacterized protein LOC105634737 [Jatropha curcas]
11 Hb_000988_020 0.1314040877 - - PREDICTED: transcription factor bHLH112 isoform X2 [Jatropha curcas]
12 Hb_000359_080 0.133817273 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
13 Hb_002234_200 0.134428628 - - PREDICTED: inactive rhomboid protein 1 [Jatropha curcas]
14 Hb_011287_020 0.1387543799 - - ATP binding protein, putative [Ricinus communis]
15 Hb_000103_400 0.1394160012 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
16 Hb_003375_080 0.1420534479 - - PREDICTED: uncharacterized protein LOC105643382 isoform X1 [Jatropha curcas]
17 Hb_001504_270 0.1421638247 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
18 Hb_001345_030 0.1437646979 - - hypothetical protein POPTR_0007s10390g, partial [Populus trichocarpa]
19 Hb_000363_110 0.144807271 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 21 [Jatropha curcas]
20 Hb_000796_200 0.148708804 - - PREDICTED: probable glycerol-3-phosphate acyltransferase 3 [Jatropha curcas]

Gene co-expression network

sample Hb_078901_010 Hb_078901_010 Hb_000805_150 Hb_000805_150 Hb_078901_010--Hb_000805_150 Hb_000434_050 Hb_000434_050 Hb_078901_010--Hb_000434_050 Hb_009476_010 Hb_009476_010 Hb_078901_010--Hb_009476_010 Hb_000245_270 Hb_000245_270 Hb_078901_010--Hb_000245_270 Hb_000172_080 Hb_000172_080 Hb_078901_010--Hb_000172_080 Hb_000373_250 Hb_000373_250 Hb_078901_010--Hb_000373_250 Hb_000805_150--Hb_000245_270 Hb_116349_090 Hb_116349_090 Hb_000805_150--Hb_116349_090 Hb_011287_020 Hb_011287_020 Hb_000805_150--Hb_011287_020 Hb_000805_150--Hb_009476_010 Hb_007441_150 Hb_007441_150 Hb_000805_150--Hb_007441_150 Hb_185080_010 Hb_185080_010 Hb_000434_050--Hb_185080_010 Hb_000015_180 Hb_000015_180 Hb_000434_050--Hb_000015_180 Hb_000434_050--Hb_000805_150 Hb_010589_130 Hb_010589_130 Hb_000434_050--Hb_010589_130 Hb_000220_090 Hb_000220_090 Hb_000434_050--Hb_000220_090 Hb_009476_010--Hb_011287_020 Hb_032260_100 Hb_032260_100 Hb_009476_010--Hb_032260_100 Hb_000422_050 Hb_000422_050 Hb_009476_010--Hb_000422_050 Hb_029622_080 Hb_029622_080 Hb_009476_010--Hb_029622_080 Hb_000506_130 Hb_000506_130 Hb_000245_270--Hb_000506_130 Hb_029238_020 Hb_029238_020 Hb_000245_270--Hb_029238_020 Hb_000245_270--Hb_116349_090 Hb_004143_050 Hb_004143_050 Hb_000245_270--Hb_004143_050 Hb_000359_080 Hb_000359_080 Hb_000172_080--Hb_000359_080 Hb_004166_010 Hb_004166_010 Hb_000172_080--Hb_004166_010 Hb_008253_040 Hb_008253_040 Hb_000172_080--Hb_008253_040 Hb_001345_030 Hb_001345_030 Hb_000172_080--Hb_001345_030 Hb_098160_010 Hb_098160_010 Hb_000172_080--Hb_098160_010 Hb_007120_010 Hb_007120_010 Hb_000373_250--Hb_007120_010 Hb_005282_010 Hb_005282_010 Hb_000373_250--Hb_005282_010 Hb_002498_250 Hb_002498_250 Hb_000373_250--Hb_002498_250 Hb_000988_020 Hb_000988_020 Hb_000373_250--Hb_000988_020 Hb_002849_110 Hb_002849_110 Hb_000373_250--Hb_002849_110 Hb_001405_060 Hb_001405_060 Hb_000373_250--Hb_001405_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.174755 6.85325 1.47649 1.60932 0.0977725 0.152225
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.122396 0.203338 0.0819692 0.224892 0.800045

CAGE analysis