Hb_011287_020

Information

Type -
Description -
Location Contig11287: 21763-23508
Sequence    

Annotation

kegg
ID rcu:RCOM_1080880
description ATP binding protein, putative
nr
ID XP_002514945.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q54DY9
description Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum GN=bcsl1b PE=3 SV=1
trembl
ID B9RMH6
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1080880 PE=4 SV=1
Gene Ontology
ID GO:0005524
description atp binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03887: 22193-22579
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011287_020 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_001846_040 0.079728028 - - cytochrome P450, putative [Ricinus communis]
3 Hb_009476_010 0.0819512778 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
4 Hb_006483_050 0.0947466286 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Jatropha curcas]
5 Hb_001477_080 0.0997028455 - - hypothetical protein POPTR_0017s04860g [Populus trichocarpa]
6 Hb_000805_150 0.1019252382 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]
7 Hb_019654_010 0.1070900625 - - multicopper oxidase, putative [Ricinus communis]
8 Hb_029622_080 0.1075621025 transcription factor TF Family: AP2 hypothetical protein JCGZ_26299 [Jatropha curcas]
9 Hb_158123_010 0.1083566004 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
10 Hb_032260_100 0.110163869 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
11 Hb_000322_020 0.1127688149 - - PREDICTED: uncharacterized protein LOC105637914 [Jatropha curcas]
12 Hb_000529_050 0.1137686466 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
13 Hb_002849_030 0.1172909629 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
14 Hb_004586_120 0.117451849 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
15 Hb_000422_050 0.118895869 - - PREDICTED: probable CCR4-associated factor 1 homolog 9 [Jatropha curcas]
16 Hb_000796_200 0.121158003 - - PREDICTED: probable glycerol-3-phosphate acyltransferase 3 [Jatropha curcas]
17 Hb_116349_090 0.1238897599 - - PREDICTED: probable galacturonosyltransferase-like 9 [Jatropha curcas]
18 Hb_001257_040 0.1242582991 - - PREDICTED: uncharacterized protein LOC105640055 [Jatropha curcas]
19 Hb_073870_020 0.1259847117 - - PREDICTED: probable receptor-like protein kinase At1g67000, partial [Jatropha curcas]
20 Hb_185080_010 0.1294228823 - - -

Gene co-expression network

sample Hb_011287_020 Hb_011287_020 Hb_001846_040 Hb_001846_040 Hb_011287_020--Hb_001846_040 Hb_009476_010 Hb_009476_010 Hb_011287_020--Hb_009476_010 Hb_006483_050 Hb_006483_050 Hb_011287_020--Hb_006483_050 Hb_001477_080 Hb_001477_080 Hb_011287_020--Hb_001477_080 Hb_000805_150 Hb_000805_150 Hb_011287_020--Hb_000805_150 Hb_019654_010 Hb_019654_010 Hb_011287_020--Hb_019654_010 Hb_001846_040--Hb_019654_010 Hb_005568_060 Hb_005568_060 Hb_001846_040--Hb_005568_060 Hb_181824_010 Hb_181824_010 Hb_001846_040--Hb_181824_010 Hb_001846_040--Hb_006483_050 Hb_035391_010 Hb_035391_010 Hb_001846_040--Hb_035391_010 Hb_032260_100 Hb_032260_100 Hb_009476_010--Hb_032260_100 Hb_009476_010--Hb_000805_150 Hb_000422_050 Hb_000422_050 Hb_009476_010--Hb_000422_050 Hb_029622_080 Hb_029622_080 Hb_009476_010--Hb_029622_080 Hb_078901_010 Hb_078901_010 Hb_009476_010--Hb_078901_010 Hb_158123_010 Hb_158123_010 Hb_006483_050--Hb_158123_010 Hb_000316_150 Hb_000316_150 Hb_006483_050--Hb_000316_150 Hb_000016_220 Hb_000016_220 Hb_006483_050--Hb_000016_220 Hb_000322_020 Hb_000322_020 Hb_006483_050--Hb_000322_020 Hb_000529_050 Hb_000529_050 Hb_001477_080--Hb_000529_050 Hb_004242_160 Hb_004242_160 Hb_001477_080--Hb_004242_160 Hb_000313_190 Hb_000313_190 Hb_001477_080--Hb_000313_190 Hb_002922_010 Hb_002922_010 Hb_001477_080--Hb_002922_010 Hb_004586_120 Hb_004586_120 Hb_001477_080--Hb_004586_120 Hb_001477_080--Hb_000322_020 Hb_000245_270 Hb_000245_270 Hb_000805_150--Hb_000245_270 Hb_000805_150--Hb_078901_010 Hb_116349_090 Hb_116349_090 Hb_000805_150--Hb_116349_090 Hb_007441_150 Hb_007441_150 Hb_000805_150--Hb_007441_150 Hb_019654_010--Hb_001477_080 Hb_003582_020 Hb_003582_020 Hb_019654_010--Hb_003582_020 Hb_001289_030 Hb_001289_030 Hb_019654_010--Hb_001289_030 Hb_019654_010--Hb_002922_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.147713 10.1532 2.39152 2.07097 0.0269766 0.0521605
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.122657 0.0964981 0.0907049 0.231059 0.303018

CAGE analysis