Hb_004242_160

Information

Type transcription factor
Description TF Family: GRAS
Location Contig4242: 144183-145892
Sequence    

Annotation

kegg
ID pop:POPTR_0001s44090g
description hypothetical protein
nr
ID XP_012070709.1
description PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]
swissprot
ID Q69VG1
description Chitin-inducible gibberellin-responsive protein 1 OS=Oryza sativa subsp. japonica GN=CIGR1 PE=2 SV=1
trembl
ID A0A067L3E6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00787 PE=4 SV=1
Gene Ontology
ID GO:0006351
description scarecrow-like protein 21

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004242_160 0.0 transcription factor TF Family: GRAS PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]
2 Hb_010417_120 0.0750569622 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001477_080 0.0794743625 - - hypothetical protein POPTR_0017s04860g [Populus trichocarpa]
4 Hb_001511_270 0.0843460925 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
5 Hb_001098_020 0.0884254462 - - PREDICTED: transcription factor bHLH123-like isoform X1 [Populus euphratica]
6 Hb_000529_050 0.0930348433 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
7 Hb_000313_190 0.0975975532 - - PREDICTED: uncharacterized protein LOC105636896 [Jatropha curcas]
8 Hb_000347_360 0.1026273208 - - PREDICTED: linoleate 13S-lipoxygenase 3-1, chloroplastic [Jatropha curcas]
9 Hb_002922_010 0.1035777127 - - heavy-metal-associated domain-containing family protein [Populus trichocarpa]
10 Hb_000260_130 0.1051756974 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
11 Hb_000322_020 0.1106042945 - - PREDICTED: uncharacterized protein LOC105637914 [Jatropha curcas]
12 Hb_003071_040 0.1118590061 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
13 Hb_116349_090 0.1125802972 - - PREDICTED: probable galacturonosyltransferase-like 9 [Jatropha curcas]
14 Hb_094839_010 0.1140061487 - - conserved hypothetical protein [Ricinus communis]
15 Hb_073870_020 0.1197334853 - - PREDICTED: probable receptor-like protein kinase At1g67000, partial [Jatropha curcas]
16 Hb_004586_120 0.1210917458 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
17 Hb_073973_180 0.1223853123 - - PREDICTED: WAT1-related protein At4g08290 isoform X1 [Populus euphratica]
18 Hb_005714_140 0.1233173083 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
19 Hb_000417_230 0.1248870711 - - conserved hypothetical protein [Ricinus communis]
20 Hb_161045_010 0.1249747302 - - hypothetical protein JCGZ_15100 [Jatropha curcas]

Gene co-expression network

sample Hb_004242_160 Hb_004242_160 Hb_010417_120 Hb_010417_120 Hb_004242_160--Hb_010417_120 Hb_001477_080 Hb_001477_080 Hb_004242_160--Hb_001477_080 Hb_001511_270 Hb_001511_270 Hb_004242_160--Hb_001511_270 Hb_001098_020 Hb_001098_020 Hb_004242_160--Hb_001098_020 Hb_000529_050 Hb_000529_050 Hb_004242_160--Hb_000529_050 Hb_000313_190 Hb_000313_190 Hb_004242_160--Hb_000313_190 Hb_002922_010 Hb_002922_010 Hb_010417_120--Hb_002922_010 Hb_073870_020 Hb_073870_020 Hb_010417_120--Hb_073870_020 Hb_027214_060 Hb_027214_060 Hb_010417_120--Hb_027214_060 Hb_000347_360 Hb_000347_360 Hb_010417_120--Hb_000347_360 Hb_025477_020 Hb_025477_020 Hb_010417_120--Hb_025477_020 Hb_001477_080--Hb_000529_050 Hb_001477_080--Hb_000313_190 Hb_001477_080--Hb_002922_010 Hb_004586_120 Hb_004586_120 Hb_001477_080--Hb_004586_120 Hb_000322_020 Hb_000322_020 Hb_001477_080--Hb_000322_020 Hb_116349_090 Hb_116349_090 Hb_001511_270--Hb_116349_090 Hb_002849_030 Hb_002849_030 Hb_001511_270--Hb_002849_030 Hb_001511_270--Hb_001477_080 Hb_009189_010 Hb_009189_010 Hb_001511_270--Hb_009189_010 Hb_000260_130 Hb_000260_130 Hb_001511_270--Hb_000260_130 Hb_003071_040 Hb_003071_040 Hb_001098_020--Hb_003071_040 Hb_001098_020--Hb_000313_190 Hb_001098_020--Hb_000529_050 Hb_073973_180 Hb_073973_180 Hb_001098_020--Hb_073973_180 Hb_094839_010 Hb_094839_010 Hb_001098_020--Hb_094839_010 Hb_000529_050--Hb_000313_190 Hb_000221_280 Hb_000221_280 Hb_000529_050--Hb_000221_280 Hb_000529_050--Hb_004586_120 Hb_000529_050--Hb_000322_020 Hb_032260_100 Hb_032260_100 Hb_000529_050--Hb_032260_100 Hb_000313_190--Hb_000221_280 Hb_000731_020 Hb_000731_020 Hb_000313_190--Hb_000731_020 Hb_000313_190--Hb_003071_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0236392 178.062 25.4896 53.0452 0.0584251 0.103158
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.134471 0.655955 0.0798795 1.88038 9.74376

CAGE analysis