Hb_094839_010

Information

Type -
Description -
Location Contig94839: 669-992
Sequence    

Annotation

kegg
ID rcu:RCOM_1689330
description hypothetical protein
nr
ID XP_002509874.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCJ0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1689330 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_094839_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000417_230 0.0597564172 - - conserved hypothetical protein [Ricinus communis]
3 Hb_073973_180 0.0703739513 - - PREDICTED: WAT1-related protein At4g08290 isoform X1 [Populus euphratica]
4 Hb_010573_030 0.085948763 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000134_010 0.086565484 - - -
6 Hb_002107_080 0.0891210933 - - JHL20J20.3 [Jatropha curcas]
7 Hb_007728_010 0.0949672871 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
8 Hb_010417_120 0.1069585274 - - conserved hypothetical protein [Ricinus communis]
9 Hb_009393_010 0.1079771116 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
10 Hb_137612_010 0.1115456412 - - cytochrome P450, putative [Ricinus communis]
11 Hb_004242_160 0.1140061487 transcription factor TF Family: GRAS PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]
12 Hb_003071_040 0.1164577292 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
13 Hb_025477_030 0.1165320155 transcription factor TF Family: ERF dehydration-responsive element-binding protein 2 [Manihot esculenta]
14 Hb_001098_020 0.1228253755 - - PREDICTED: transcription factor bHLH123-like isoform X1 [Populus euphratica]
15 Hb_002922_010 0.126678006 - - heavy-metal-associated domain-containing family protein [Populus trichocarpa]
16 Hb_002422_020 0.1268309595 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
17 Hb_013591_010 0.1303295856 - - Mitogen-activated protein kinase kinase kinase 1 [Glycine soja]
18 Hb_000313_190 0.1311013768 - - PREDICTED: uncharacterized protein LOC105636896 [Jatropha curcas]
19 Hb_170979_010 0.132194201 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
20 Hb_165552_020 0.1343574316 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]

Gene co-expression network

sample Hb_094839_010 Hb_094839_010 Hb_000417_230 Hb_000417_230 Hb_094839_010--Hb_000417_230 Hb_073973_180 Hb_073973_180 Hb_094839_010--Hb_073973_180 Hb_010573_030 Hb_010573_030 Hb_094839_010--Hb_010573_030 Hb_000134_010 Hb_000134_010 Hb_094839_010--Hb_000134_010 Hb_002107_080 Hb_002107_080 Hb_094839_010--Hb_002107_080 Hb_007728_010 Hb_007728_010 Hb_094839_010--Hb_007728_010 Hb_000417_230--Hb_002107_080 Hb_000417_230--Hb_073973_180 Hb_000417_230--Hb_010573_030 Hb_003071_040 Hb_003071_040 Hb_000417_230--Hb_003071_040 Hb_004968_050 Hb_004968_050 Hb_000417_230--Hb_004968_050 Hb_073973_180--Hb_002107_080 Hb_161045_010 Hb_161045_010 Hb_073973_180--Hb_161045_010 Hb_001098_020 Hb_001098_020 Hb_073973_180--Hb_001098_020 Hb_073973_180--Hb_010573_030 Hb_010573_030--Hb_007728_010 Hb_002422_020 Hb_002422_020 Hb_010573_030--Hb_002422_020 Hb_137612_010 Hb_137612_010 Hb_010573_030--Hb_137612_010 Hb_013591_010 Hb_013591_010 Hb_010573_030--Hb_013591_010 Hb_010573_030--Hb_000134_010 Hb_000134_010--Hb_137612_010 Hb_000134_010--Hb_007728_010 Hb_025477_030 Hb_025477_030 Hb_000134_010--Hb_025477_030 Hb_167802_010 Hb_167802_010 Hb_000134_010--Hb_167802_010 Hb_002107_080--Hb_004968_050 Hb_000318_320 Hb_000318_320 Hb_002107_080--Hb_000318_320 Hb_002107_080--Hb_010573_030 Hb_007728_010--Hb_137612_010 Hb_007728_010--Hb_002422_020 Hb_007728_010--Hb_013591_010 Hb_165552_020 Hb_165552_020 Hb_007728_010--Hb_165552_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.175561 89.8865 8.13268 35.6258 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.244375 0 0.334141 1.57365

CAGE analysis