Hb_004968_050

Information

Type -
Description -
Location Contig4968: 64749-65372
Sequence    

Annotation

kegg
ID pop:POPTR_0010s20360g
description POPTRDRAFT_770285; protease inhibitor/seed storage/lipid transfer family protein
nr
ID XP_012088327.1
description PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9HT39
description Protease inhibitor/seed storage/lipid transfer family protein OS=Populus trichocarpa GN=POPTR_0010s20360g PE=4 SV=1
Gene Ontology
ID GO:0008233
description lipid-transfer protein dir1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004968_050 0.0 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
2 Hb_002107_080 0.0981510369 - - JHL20J20.3 [Jatropha curcas]
3 Hb_000417_230 0.1133993157 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000087_180 0.1188771566 - - conserved hypothetical protein [Ricinus communis]
5 Hb_073973_180 0.1231544456 - - PREDICTED: WAT1-related protein At4g08290 isoform X1 [Populus euphratica]
6 Hb_005183_010 0.1238059059 - - PREDICTED: probable calcium-binding protein CML17 [Malus domestica]
7 Hb_000318_320 0.1268972874 - - PREDICTED: transmembrane protein 45B [Jatropha curcas]
8 Hb_007007_110 0.1340566079 - - hypothetical protein JCGZ_14479 [Jatropha curcas]
9 Hb_017434_020 0.1348474656 transcription factor TF Family: C2H2 Zinc finger protein 4 [Populus trichocarpa]
10 Hb_094839_010 0.1353540951 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003800_010 0.1383751166 - - PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jatropha curcas]
12 Hb_000506_130 0.1389896122 - - DGCR14-related family protein [Populus trichocarpa]
13 Hb_004143_050 0.1452896597 - - PREDICTED: uncharacterized protein LOC105630712 [Jatropha curcas]
14 Hb_043115_010 0.1463501005 - - hypothetical protein JCGZ_16710 [Jatropha curcas]
15 Hb_004607_180 0.1550467043 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001213_140 0.1591734391 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
17 Hb_000413_260 0.1595571239 - - kinase, putative [Ricinus communis]
18 Hb_047725_010 0.160681095 - - ceramidase, putative [Ricinus communis]
19 Hb_116349_090 0.1672308093 - - PREDICTED: probable galacturonosyltransferase-like 9 [Jatropha curcas]
20 Hb_005714_140 0.1682599966 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_004968_050 Hb_004968_050 Hb_002107_080 Hb_002107_080 Hb_004968_050--Hb_002107_080 Hb_000417_230 Hb_000417_230 Hb_004968_050--Hb_000417_230 Hb_000087_180 Hb_000087_180 Hb_004968_050--Hb_000087_180 Hb_073973_180 Hb_073973_180 Hb_004968_050--Hb_073973_180 Hb_005183_010 Hb_005183_010 Hb_004968_050--Hb_005183_010 Hb_000318_320 Hb_000318_320 Hb_004968_050--Hb_000318_320 Hb_002107_080--Hb_000417_230 Hb_094839_010 Hb_094839_010 Hb_002107_080--Hb_094839_010 Hb_002107_080--Hb_073973_180 Hb_002107_080--Hb_000318_320 Hb_010573_030 Hb_010573_030 Hb_002107_080--Hb_010573_030 Hb_000417_230--Hb_094839_010 Hb_000417_230--Hb_073973_180 Hb_000417_230--Hb_010573_030 Hb_003071_040 Hb_003071_040 Hb_000417_230--Hb_003071_040 Hb_017434_020 Hb_017434_020 Hb_000087_180--Hb_017434_020 Hb_000087_180--Hb_005183_010 Hb_000506_130 Hb_000506_130 Hb_000087_180--Hb_000506_130 Hb_005714_140 Hb_005714_140 Hb_000087_180--Hb_005714_140 Hb_000087_180--Hb_000417_230 Hb_073973_180--Hb_094839_010 Hb_161045_010 Hb_161045_010 Hb_073973_180--Hb_161045_010 Hb_001098_020 Hb_001098_020 Hb_073973_180--Hb_001098_020 Hb_073973_180--Hb_010573_030 Hb_012395_260 Hb_012395_260 Hb_005183_010--Hb_012395_260 Hb_000668_170 Hb_000668_170 Hb_005183_010--Hb_000668_170 Hb_005183_010--Hb_000417_230 Hb_005183_010--Hb_017434_020 Hb_077562_010 Hb_077562_010 Hb_000318_320--Hb_077562_010 Hb_000984_120 Hb_000984_120 Hb_000318_320--Hb_000984_120 Hb_007007_110 Hb_007007_110 Hb_000318_320--Hb_007007_110 Hb_002078_210 Hb_002078_210 Hb_000318_320--Hb_002078_210 Hb_011609_060 Hb_011609_060 Hb_000318_320--Hb_011609_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.49422 164.835 10.7871 84.8069 1.35368 1.16904
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.45249 2.90465 0.176099 0.473943 8.55186

CAGE analysis